circRNA basic information
circBase ID: -
Name: hsa_circ_HERPUD2
Synonym: hsa_circHERPUD2
Host Gene: HERPUD2
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005010
MONDO name: coronary artery disorder
Disease details: coronary artery disease / CAD
Disease DO ID:
3393
Disease MeSH ID:
D003324
Disease NCIt ID:
C26732
Disease ICD11 ID:
1059873720
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

peripheral blood mononuclear cells / PBMCs; coronary artery segments

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: -
Associated microRNA: -
Biological function: Potential diagnostic biomarker for CAD; shows antagonistic interaction with alcohol consumption in CAD subjects.
Molecular mechanism: ceRNA mechanism (predicted circRNA-miRNA-mRNA network).
Biological pathway or process:

ceRNA regulation (other); other pathway/process (other)

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; Sanger Sequencing; Back-Splice Junction PCR / divergent primers PCR; Clinical Sample Validation; ROC Analysis; Cohort Study; Bioinformatics Analysis

Clinical significance:

Down-regulated in CAD and shows diagnostic value (ROC AUC 0.662). Antagonistic interaction between hsa_circHERPUD2 expression and alcohol consumption was observed in CAD subjects.

Description:

hsa_circHERPUD2 is significantly down-regulated in PBMCs of CAD patients and has moderate diagnostic value (ROC AUC 0.662). Its expression shows a significant antagonistic interaction with alcohol consumption in CAD subjects, and it is part of a predicted circRNA-miRNA-mRNA ceRNA network linked to CAD.

Confidence score:

0.6895

Other information
Title:

Interaction between the expression of hsa_circRPRD1A and hsa_circHERPUD2 and classical coronary risk factors promotes the development of coronary artery disease.

Journal: BMC medical genomics
Published: 2023
PubMed ID: 37316908
Study type:

combined biological and clinical study

Data availability: GSE205255
Code availability: -