circRNA basic information
circBase ID: hsa_circ_0000337
Name: hsa_circ_PPFIA1
Synonym: circPPFIA1-S / hsa_circRNA_100872
Host Gene: PPFIA1
Genomic location(hg19): chr11:70200406-70202360:+
Genomic location(hg38): chr11:70354300-70356254:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer / CRC
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

primary CRC tumor tissues; liver metastatic tumor tissues

Cell lines:

KM12C; KM12L4; DLD1; RKO

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: CDX1, Hu antigen R (HuR), RAB36
Associated microRNA: miR-155-5p
Biological function: Inhibits metastatic potential (invasion and migration) and suppresses liver metastasis of CRC.
Molecular mechanism: Acts as a sponge/decoy for miR-155-5p to upregulate CDX1; sequesters HuR to reduce HuR-mediated stabilization of RAB36 mRNA, decreasing RAB36.
Biological pathway or process:

migration (inhibits); invasion (inhibits); metastasis (inhibits); ceRNA regulation (promotes); mRNA stability (inhibits)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; Sanger Sequencing; Nuclear-Cytoplasmic Fractionation; ISH (In Situ Hybridization); RNA Pull-Down; RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; Transfection; Transwell Assay; In Vivo Animal Model; Western Blot; Clinical Sample Validation

Clinical significance:

Potential clinical diagnosis/therapeutic target for liver metastatic CRC.

Description:

circPPFIA1-S (hsa_circ_0000337) is downregulated in liver-metastatic CRC models and patient liver metastatic tissues. It suppresses invasion/migration and liver metastasis by sponging miR-155-5p to increase CDX1, and by binding/sequestering HuR to reduce HuR-driven RAB36 mRNA stabilization and expression.

Confidence score:

0.8439

Other information
Title:

Two circPPFIA1s negatively regulate liver metastasis of colon cancer via miR-155-5p/CDX1 and HuR/RAB36.

Journal: Molecular cancer
Published: 2022
PubMed ID: 36224588
Study type:

combined biological and clinical study

Data availability: available from the corresponding author upon a reasonable request
Code availability: -