circRNA basic information
circBase ID: hsa_circ_0072309
Name: -
Synonym: circ0072309
Host Gene: -
Genomic location(hg19): chr5:38523520-38530768:-
Genomic location(hg38): chr5:38523418-38530666:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer / GC
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

GC tissues; non-cancerous tissues

Cell lines:

GES1; MNK-45; HGC-27; AGS; MKN-45

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: AGO2
Associated microRNA: hsa-miR-34a-3p, hsa-miR-330-5p
Biological function: Suppresses gastric cancer cell proliferation, migration, and invasion in vitro.
Molecular mechanism: Acts as a miRNA-binding circRNA and directly binds hsa-miR-34a-3p and hsa-miR-330-5p (validated by luciferase reporter assay and AGO2-RIP).
Biological pathway or process:

proliferation (inhibits); migration (inhibits); invasion (inhibits); ceRNA regulation (other)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; Clinical Sample Validation; Transfection; CCK8; Colony Formation Assay; Wound Healing Assay; Transwell Assay; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); Bioinformatics Analysis; ROC Analysis

Clinical significance:

Downregulation in GC tissues; associated with tumor size, vascular invasion, and lymph node metastasis; potential biomarker for diagnosing and predicting LNM in GC.

Description:

hsa_circ_0072309 is down-regulated in gastric cancer tissues and cell lines and functions as a tumor-suppressive circRNA by inhibiting GC cell proliferation, migration and invasion in vitro. Mechanistically, it binds hsa-miR-34a-3p and hsa-miR-330-5p as a miRNA-interacting circRNA and is proposed as a biomarker related to lymph node metastasis.

Confidence score:

0.7745

Other information
Title:

Hsa_circ_0072309 is a prognostic biomarker and is correlated with immune infiltration in gastric cancer.

Journal: Heliyon
Published: 2023
PubMed ID: 36852074
Study type:

combined biological and clinical study

Data availability: GSE83521; GSE100170; TCGA-STAD; https://doi.org/10.1016/j.heliyon.2023.e13191
Code availability: -