circRNA basic information
circBase ID: hsa_circ_0057558
Name: -
Synonym: circ_0057558
Host Gene: -
Genomic location(hg19): chr2:196571339-196593073:+
Genomic location(hg38): chr2:195706615-195728349:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0008315
MONDO name: prostate cancer
Disease details: Prostate cancer / PCa
Disease DO ID:
10283
Disease MeSH ID:
D011471
Disease NCIt ID:
C7378
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

prostate cancer tissues; paracancerous tissues; prostate puncture tissues; BPH tissues

Cell lines:

22RV1; DU145; Lncap; PC3; HPEpic

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: AQP1, TUBA1A, LPAR1, EMP1, DHTK1, GINS2, DI03, ITK
Associated microRNA: miR-6884-3p
Biological function: Potential diagnostic biomarker for prostate cancer; may be associated with lipid metabolism and may promote prostate cancer growth through regulation of lipid metabolism.
Molecular mechanism: Predicted ceRNA mechanism involving circ_0057558 acting on miR-6884-3p to regulate target genes; possible regulation of lipid metabolism.
Biological pathway or process:

ceRNA regulation (other); lipid metabolism (other); proliferation (promotes)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; Clinical Sample Validation; ROC Analysis; Bioinformatics Analysis

Clinical significance:

AUC of circ_0057558 was 0.729; combined detection with circ_0062019 and PSA improved diagnostic performance for distinguishing PCa from BPH; circ_0057558 was positively correlated with total cholesterol.

Description:

circ_0057558 was up-regulated in prostate cancer cell lines and tissues and was validated by qRT-PCR. It may function as a diagnostic biomarker, and the study suggests a predicted circ_0057558/miR-6884-3p/target-gene ceRNA relationship potentially linked to lipid metabolism in prostate cancer.

Confidence score:

0.5047

Other information
Title:

Circular RNA Expression Profiling Identifies Prostate Cancer- Specific circRNAs in Prostate Cancer.

Journal: Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology
Published: 2018
PubMed ID: 30396163
Study type:

combined biological and clinical study

Data availability: www.karger.com/10.1159/000494870/
Code availability: -