circRNA basic information
circBase ID: -
Name: hsa_circ_VIM
Synonym: hsa_circ _000520
Host Gene: VIM
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: extracellular
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma / HCC
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

sera; blood serum samples

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: VIM
Associated microRNA: -
Biological function: Potential noninvasive serum biomarker for HCC diagnosis and prognostic evaluation; associated with relapse-free survival and identified as an independent prognostic factor of RFS.
Molecular mechanism: Bioinformatics-based selection suggested involvement of the selected circRNA panel in Wnt signalling, IKK/NF-kappaB signaling, and cell proliferation; a proposed miRNA-sponge role targeting VIM was discussed but considered inconsistent with the study results and was not experimentally validated.
Biological pathway or process:

Wnt/beta-catenin (other); NF-kappaB (other); proliferation (other)

Detected method:
Q
Validation methods:

RNase R Treatment; RT-qPCR; Clinical Sample Validation; ROC Analysis; Survival Analysis; Bioinformatics Analysis

Clinical significance:

Strong serum biomarker potential with relatively high sensitivity and specificity compared with AFP; expression associated with relapse-free survival and reported as an independent prognostic factor of RFS.

Description:

hsa_circ_000520 was selected as part of a bioinformatics-derived serum circRNA biomarker panel and validated by RT-qPCR in clinical serum samples. It was down-regulated in HCC, showed strong diagnostic biomarker potential, and was associated with worse relapse-free survival when positive/high, including independent prognostic value in Cox analysis.

Confidence score:

0.6023

Other information
Title:

circRNAs (hsa_circ_00156, hsa_circ _000224, and hsa_circ _000520) are novel potential biomarkers in hepatocellular carcinoma.

Journal: Journal of cellular biochemistry
Published: 2019
PubMed ID: 30426540
Study type:

combined bioinformatics and clinical study

Data availability: Supporting Information Table 1; Supporting Information Table 2; Supporting Information Table 3; Supporting Information Table 4
Code availability: -