circRNA basic information
circBase ID: hsa_circ_0098181
Name: hsa_circ_SOX5
Synonym: circ_0098181
Host Gene: SOX5
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma / HCC
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

human HCC tissues; paratumor tissues; mouse HCC tissues; subcutaneous xenograft tumors

Cell lines:

Huh7; Hep3B; PLC; HEK-293 T

In vivo animal model:

cell line-derived xenograft; other disease animal model

circRNA-disease information
Expression pattern:
DN
Associated gene: PPARA, Ago2
Associated microRNA: miR-18a-3p
Biological function: inhibits proliferation, invasion, migration, and colony formation; promotes apoptosis; suppresses tumor formation in vivo
Molecular mechanism: acts as a miRNA sponge for miR-18a-3p, thereby increasing PPARA expression
Biological pathway or process:

proliferation (inhibits); invasion (inhibits); migration (inhibits); apoptosis (promotes); ceRNA regulation (promotes)

Detected method:
Q
H
S
Validation methods:

RNA-seq; RT-qPCR; RNase R Treatment; divergent primers PCR; FISH / smFISH; Clinical Sample Validation; Survival Analysis; Bioinformatics Analysis; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); Transfection; CCK8; Transwell Assay; Colony Formation Assay; Annexin V/PI Flow Cytometry; In Vivo Animal Model; Western Blot; IHC (Immunohistochemistry)

Clinical significance:

low expression of hsa_circ_0098181 was related to poor prognosis

Description:

hsa_circ_0098181 is down-regulated in HCC tissues/cell lines and acts as a tumor suppressor. It mainly localizes in the cytoplasm and inhibits malignant phenotypes by sponging miR-18a-3p to derepress PPARA, reducing tumor growth in a xenograft model; low expression is associated with poor prognosis.

Confidence score:

0.8657

Other information
Title:

Hsa_Circ_0098181 Suppresses Hepatocellular Carcinoma by Sponging miR-18a-3p and Targeting PPARA.

Journal: Frontiers in pharmacology
Published: 2022
PubMed ID: 35264957
Study type:

combined biological and clinical study

Data availability: GSE190174; GSE190254; GSE190255
Code availability: -