circRNA basic information
circBase ID: hsa_circ_0000236
Name: -
Synonym: circ_0000236
Host Gene: -
Genomic location(hg19): chr10:43650344-43654379:+
Genomic location(hg38): chr10:43154896-43158931:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer / CRC
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

-

Cell lines:

HCT116; Lovo; HT29; SW480

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: PLAG1, TNS4
Associated microRNA: miR4769-5p, miR-4796-5p
Biological function: Involved in the formation/development of 5-Fu resistance in CRC cells; potential predictive biomarker/therapeutic target for 5-Fu resistance.
Molecular mechanism: Potential ceRNA mechanism via circRNA-miRNA-mRNA regulatory axes (e.g., circ_0000236-miR4769-5p-PLAG1; hypothesized circ_0000236-miR-4796-5p-TNS4).
Biological pathway or process:

ceRNA regulation (other); drug resistance (promotes)

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; Bioinformatics Analysis

Clinical significance:

May serve as a biomarker to predict the occurrence of 5-Fu resistance in CRC.

Description:

hsa_circ_0000236 is up-regulated in 5-Fu-resistant CRC cell lines and is implicated in promoting 5-Fu resistance via a predicted ceRNA mechanism. The study proposes axes such as circ_0000236-miR4769-5p-PLAG1 and (speculatively) circ_0000236-miR-4796-5p-TNS4, and suggests biomarker potential for predicting 5-Fu resistance.

Confidence score:

0.2465

Other information
Title:

RNA-Seq profiling of circular RNAs in human colorectal cancer 5-fluorouracil resistance and potential biomarkers.

Journal: World journal of gastrointestinal oncology
Published: 2022
PubMed ID: 35321280
Study type:

biological research

Data availability: The datasets used during the current study were available from the corresponding authors on reasonable request.
Code availability: -