circRNA basic information
circBase ID: hsa_circ_0006948
Name: hsa_circ_FNDC3B
Synonym: circRNA FNDC3B / circ_0006948
Host Gene: FNDC3B
Genomic location(hg19): chr3:171830241-171944737:+
Genomic location(hg38): chr3:172112451-172226947:+
Subcellular localization: cytoplasm; exosome
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005580
MONDO name: esophageal squamous cell carcinoma
Disease details: esophageal squamous cell carcinoma / ESCC
Disease DO ID:
3748
Disease MeSH ID:
C562729; D000077277
Disease NCIt ID:
C4024
Disease ICD11 ID:
1417891145
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

ESCC tissue samples; matched nearby normal tissue samples; exosomes; tumor tissue

Cell lines:

HET-1A; KYSE30; KYSE180; KYSE450; EC109

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: TXNRD1
Associated microRNA: miR-490-5p
Biological function: promotes proliferation, migration, invasion, glycolysis and in vivo tumor growth; inhibits apoptosis (knockdown increases apoptosis)
Molecular mechanism: Exosomal circFNDC3B acts as a ceRNA sponge for miR-490-5p to regulate TXNRD1 expression.
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); apoptosis (inhibits); glycolysis (promotes); ceRNA regulation (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; RNA-seq; Sanger Sequencing; Nuclear-Cytoplasmic Fractionation; RNase R Treatment; Actinomycin D / DRB Stability Assay; Clinical Sample Validation; ROC Analysis; Survival Analysis; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); RNA Pull-Down; Transfection; Colony Formation Assay; EdU Staining; Wound Healing Assay; Transwell Assay; Annexin V/PI Flow Cytometry; Western Blot; IHC (Immunohistochemistry); In Vivo Animal Model; Bioinformatics Analysis

Clinical significance:

circFNDC3B was able to discriminate the ESCC tissues from the normal tissues (AUC 0.9043); high circFNDC3B expression was significantly associated with TNM stage and lymph node invasion; patients with high circFNDC3B expression had poor survival

Description:

circFNDC3B (hsa_circ_0006948) is up-regulated in ESCC tissues/cells and ESCC-derived exosomes and promotes malignant phenotypes (proliferation, migration/invasion, glycolysis) and xenograft growth. Mechanistically, it is delivered via exosomes and functions as a ceRNA by sponging miR-490-5p, thereby increasing TXNRD1 expression. High circFNDC3B is associated with advanced stage/lymph node invasion, diagnostic value (ROC AUC 0.9043), and poorer overall survival.

Confidence score:

0.8921

Other information
Title:

Exosomal circRNA FNDC3B promotes the progression of esophageal squamous cell carcinoma by sponging miR-490-5p and regulating thioredoxin reductase 1 expression.

Journal: Bioengineered
Published: 2022
PubMed ID: 35703190
Study type:

combined biological and clinical study

Data availability: GSE131969; https://doi.org/10.1080/21655979.2022.2084484
Code availability: -