circRNA basic information
circBase ID: -
Name: hsa_circ_LNPEP
Synonym: circLNPEP
Host Gene: LNPEP
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0003864
MONDO name: chronic lymphocytic leukemia/small lymphocytic lymphoma
Disease details: chronic lymphocytic leukemia / CLL
Disease DO ID:
6354
Disease MeSH ID:
-
Disease NCIt ID:
C27911
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

CLL lymphocytes; healthy B-cells / normal B-cells / healthy B-lymphocytes

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: -
Associated microRNA: miR-15a-5p, miR-19a-3p, miR-135a-5p, miR-138-5p
Biological function: key player in CLL growth and progression
Molecular mechanism: miRNA sponging (miR-15a-5p; miR-19a-3p; miR-135a-5p; miR-138-5p) affecting activation pathways supporting protein acetylation, RNA polymerase II-dependent transcription, and regulation of intracellular signal transduction
Biological pathway or process:

ceRNA regulation (other); other pathway/process (other)

Detected method:
S
Validation methods:

RNA-seq; Bioinformatics Analysis; ROC Analysis; Survival Analysis; Cohort Study

Clinical significance:

Diagnostic biomarker (AUC reported) and prognostic association with 5-year OS (high level associated with worse OS).

Description:

circLNPEP is increased in CLL and serves as part of a diagnostic/prognostic circRNA panel. It is predicted to function via miRNA sponging (miR-15a-5p/miR-19a-3p/miR-135a-5p/miR-138-5p) to influence intracellular signal transduction-related activation programs, and higher expression is linked to worse OS in validation cohorts.

Confidence score:

0.5121

Other information
Title:

Circular RNA Expression Signatures Provide Promising Diagnostic and Therapeutic Biomarkers for Chronic Lymphocytic Leukemia.

Journal: Cancers
Published: 2023
PubMed ID: 36900344
Study type:

bioinformatics study

Data availability: GSE151159; GSE92626; GSE66117; GSE111014; GSE119103; GSE66121; GSE11154; GSE95352; GSE161711; GSE109085; GSE113386; GSE70830; GSE100026; GSE66228; GSE66167; GSE216288; GSE192685; GSE198454; GSE197811; GSE196741; GSE165087; GSE176141; GSE130385; GSE162427; GSE136634; GSE123777; GSE111015; E-MTAB-12124; E-MTAB-1176
Code availability: -