circRNA basic information
circBase ID: hsa_circ_0005986
Name: hsa_circ_PRDM2
Synonym: -
Host Gene: PRDM2
Genomic location(hg19): chr1:14057494-14068652:+
Genomic location(hg38): chr1:13730999-13742157:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tissues; adjacent non-tumorous tissues; matched non-tumorous tissues; para-tumorous tissues

Cell lines:

HepG2; SMMC7721; Huh7; MHCC97L; MHCC97H; HCCLM3; L02

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: Notch1mRNA / NOTCH1 mRNA
Associated microRNA: miR-129-5p
Biological function: Inhibits carcinogenesis; suppresses cell proliferation; regulates cell cycle transition
Molecular mechanism: Acts as a miR-129-5p sponge (ceRNA) to regulate NOTCH1 mRNA expression
Biological pathway or process:

ceRNA regulation (other); proliferation (inhibits); cell cycle (inhibits)

Detected method:
Q
M
Validation methods:

divergent primers PCR; RT-qPCR; Sanger Sequencing; Luciferase Reporter Assay; Transfection; Cell Cycle Assay; In Vivo Animal Model; Bioinformatics Analysis; Microarray

Clinical significance:

Low expression of hsa_circ_0005986 was correlated with chronic hepatitis B family history, tumor diameters, microvascular invasion, and BCLC stage; might be a potential biomarker for the diagnosis of HCC

Description:

In hepatocellular carcinoma, hsa_circ_0005986 is down-regulated in tumors and HCC cell lines. It acts as a ceRNA sponge for miR-129-5p to modulate NOTCH1 mRNA, and its knockdown promotes cell-cycle progression and proliferation. Clinically, low hsa_circ_0005986 expression correlates with multiple aggressive clinicopathological features and is proposed as a diagnostic biomarker.

Confidence score:

0.7082

Other information
Title:

Hsa_circ_0005986 inhibits carcinogenesis by acting as a miR-129-5p sponge and is used as a novel biomarker for hepatocellular carcinoma.

Journal: Oncotarget
Published: 2017
PubMed ID: 28410211
Study type:

combined biological and clinical study

Data availability: GSE94508
Code availability: -