circRNA basic information
circBase ID: -
Name: hsa_circ_SLC30A7
Synonym: hsa_circRNA_100290
Host Gene: SLC30A7
Genomic location(hg19): chr1:101372407-101379362:.
Genomic location(hg38): chr1:100906851-100913806:.
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0004958
MONDO name: oral cavity squamous cell carcinoma
Disease details: oral squamous cell carcinoma
Disease DO ID:
0050866
Disease MeSH ID:
-
Disease NCIt ID:
C4833
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

OSCC tissue; paired NCMT

Cell lines:

SCC9; CAL27; HN4; 293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: CDK6
Associated microRNA: miR-29a, miR-29b, miR-29c, miR-299, miR-29b-3p, miR-29c-3p, miR-29a-3p
Biological function: sustains cell cycle progression and promotes proliferation; knockdown inhibits proliferation and induces G1/S arrest; promotes tumor growth in vivo
Molecular mechanism: Acts as a competing endogenous RNA (ceRNA) that sponges miR-29 family members to regulate CDK6 expression
Biological pathway or process:

ceRNA regulation (promotes); cell cycle (promotes); proliferation (promotes)

Detected method:
Q
M
Validation methods:

Microarray; RNase R Treatment; RT-qPCR; Clinical Sample Validation; Bioinformatics Analysis; Luciferase Reporter Assay; Transfection; RIP (RNA Immunoprecipitation); MTT; BrdU; Cell Cycle Assay; In Vivo Animal Model; IF (Immunofluorescence); Western Blot; IHC (Immunohistochemistry)

Clinical significance:

Potential target for OSCC therapy

Description:

circRNA_100290 is up-regulated in OSCC tissues/cell lines and promotes OSCC cell-cycle progression and proliferation as well as tumor growth in vivo. Mechanistically, it acts as a ceRNA/miRNA sponge for the miR-29 family (miR-29a/b/c), thereby relieving miR-29-mediated repression of CDK6 and sustaining CDK6 expression.

Confidence score:

0.8174

Other information
Title:

circRNA_100290 plays a role in oral cancer by functioning as a sponge of the miR-29 family.

Journal: Oncogene
Published: 2017
PubMed ID: 28368401
Study type:

combined biological and clinical study

Data availability: Supplementary Data 1; Supplementary Data 2; Supplementary Data 3; Supplementary Data 4; Supplementary Tables 1 and 2; http://www.nature.com/onc
Code availability: -