circRNA basic information
circBase ID: hsa_circ_0002111
Name: hsa_circ_PSD3
Synonym: circPSD3
Host Gene: PSD3
Genomic location(hg19): chr8:18622958-18662408:-
Genomic location(hg38): chr8:18765448-18804898:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005005
MONDO name: clear cell renal carcinoma
Disease details: clear cell renal cell carcinoma / ccRCC
Disease DO ID:
4467
Disease MeSH ID:
-
Disease NCIt ID:
C4033
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

primary ccRCC tumor tissues; adjacent nontumor tissues / adjacent normal renal tissues

Cell lines:

ACHN; Caki-1; 786O; 769P; A498; HK-2; 293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: FBXW7
Associated microRNA: miR-25-3p
Biological function: Inhibits ccRCC cell migration, invasion, EMT, and pulmonary metastasis; suppresses tumor growth in xenograft model.
Molecular mechanism: Acts as a ceRNA (miRNA sponge) for miR-25-3p to increase FBXW7 expression, thereby inhibiting EMT and metastasis.
Biological pathway or process:

EMT (inhibits); metastasis (inhibits); migration (inhibits); invasion (inhibits); ceRNA regulation (promotes)

Detected method:
Q
S
M
Validation methods:

Microarray; RNA-seq; RT-qPCR; Sanger Sequencing; Actinomycin D / DRB Stability Assay; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; RNA Pull-Down; Luciferase Reporter Assay; Transfection; CCK8; Transwell Assay; Wound Healing Assay; Western Blot; IHC (Immunohistochemistry); In Vivo Animal Model; H&E Staining; ROC Analysis; Bioinformatics Analysis; Clinical Sample Validation

Clinical significance:

Low circPSD3 expression was associated with tumor metastasis in patients with ccRCC; circPSD3 showed good performance for predicting metastasis (AUC 0.824).

Description:

circPSD3 (hsa_circ_0002111), derived from PSD3, is down-regulated in ccRCC tissues and cell lines and is associated with metastasis. Functionally, circPSD3 suppresses migration/invasion, EMT, and lung metastasis by sponging miR-25-3p to upregulate FBXW7, forming the circPSD3/miR-25-3p/FBXW7-EMT axis.

Confidence score:

0.8693

Other information
Title:

Downregulation of Circular RNA circPSD3 Promotes Metastasis by Modulating FBXW7 Expression in Clear Cell Renal Cell Carcinoma.

Journal: Journal of oncology
Published: 2022
PubMed ID: 35295711
Study type:

combined biological and clinical study

Data availability: GSE100186
Code availability: -