circRNA basic information
circBase ID: hsa_circ_0000396
Name: hsa_circ_SLC38A1
Synonym: circSLC38A1
Host Gene: SLC38A1
Genomic location(hg19): chr12:46622935-46637097:-
Genomic location(hg38): chr12:46229152-46243314:-
Subcellular localization: nucleus and cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0004986
MONDO name: urinary bladder carcinoma
Disease details: bladder cancer / BCa
Disease DO ID:
4007
Disease MeSH ID:
-
Disease NCIt ID:
C4912
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

BC tissues; adjacent noncancerous tissues; serum

Cell lines:

SV-HUC-1; UMUC3; J82; T24; RT4; SW780; 5637; HEK293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: ILF3, TGF-beta2, IGF2BP2, IGF2BP3, METTL3, FTO
Associated microRNA: -
Biological function: promotes invasion, migration, EMT and metastasis in bladder cancer; serves as a potential diagnostic biomarker in serum exosomes
Molecular mechanism: circSLC38A1 binds ILF3, inhibits ILF3 ubiquitination/protein degradation to stabilize ILF3, and recruits ILF3 to activate transcription of TGF-beta2; m6A modification contributes to circSLC38A1 upregulation
Biological pathway or process:

EMT (promotes); metastasis (promotes); ubiquitination (inhibits); m6A modification (promotes)

Detected method:
Q
H
S
Validation methods:

circRNA-seq; RT-qPCR; Clinical Sample Validation; Cohort Study; Survival Analysis; ROC Analysis; Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; Actinomycin D / DRB Stability Assay; FISH / smFISH; ISH (In Situ Hybridization); RNA Pull-Down; RIP (RNA Immunoprecipitation); IF (Immunofluorescence); Western Blot; Transfection; Transwell Assay; Wound Healing Assay; In Vivo Animal Model; H&E Staining; MeRIP / MeRIP-seq; Bioinformatics Analysis; ChIP / ChIP-seq

Clinical significance:

High tumoral circSLC38A1 levels correlate with shorter overall survival; serum exosomal circSLC38A1 distinguishes BC patients from healthy individuals (AUC=0.878)

Description:

circSLC38A1 (hsa_circ_0000396), derived from SLC38A1, is up-regulated in bladder cancer tissues/cell lines and promotes migration, invasion, EMT and lung metastasis. Mechanistically, it binds the RBP ILF3, inhibits ILF3 ubiquitination to stabilize ILF3, and facilitates ILF3-dependent transcriptional activation of TGF-beta2; its upregulation is supported by m6A modification (METTL3/FTO-related). Clinically, high tumor expression predicts poorer OS, and serum exosomal circSLC38A1 shows diagnostic value (AUC 0.878).

Confidence score:

0.9013

Other information
Title:

Characterization of circSCL38A1 as a novel oncogene in bladder cancer via targeting ILF3/TGF-beta2 signaling axis.

Journal: Cell death & disease
Published: 2023
PubMed ID: 36697384
Study type:

combined biological and clinical study

Data availability: GSE190079; GSE186226; GSE186225
Code availability: -