circRNA basic information
circBase ID: hsa_circ_0054223
Name: hsa_circ_THUMPD2
Synonym: hsa_circ_0054223_CBC1 / circ_0054223
Host Gene: THUMPD2
Genomic location(hg19): chr2:39983028-39998780:-
Genomic location(hg38): chr2:39755888-39771640:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
 0008383
MONDO name: rheumatoid arthritis
Disease details: rheumatoid arthritis / RA
Disease DO ID:
 7148
Disease MeSH ID:
 D001172
Disease NCIt ID:
 C2884
Disease ICD11 ID:
 576319925
Disease OMIM ID:
 180300
Species: Human
Species details: Homo sapiens
Tissue specimen:

peripheral blood mononuclear cells / PBMCs
Cell lines:

-
In vivo animal model:

-
circRNA-disease information
Expression pattern:
UP
Associated gene: RICTOR
Associated microRNA: hsa-miR-17-3p, hsa-miR-370-3p, hsa-miR-671-5p
Biological function: unknown
Molecular mechanism: Putative ceRNA/miRNA sponge mechanism affecting RICTOR expression.
Biological pathway or process:

ceRNA regulation (other); immune regulation (other)
Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; Clinical Sample Validation; Bioinformatics Analysis
Clinical significance:

Expression level correlates with inflammation/laboratory indices (ESR, CRP, RF).
Description:

hsa_circ_0054223 is up-regulated in RA PBMCs and was validated by RT-qPCR. Bioinformatics suggests it may sponge specific miRNAs to regulate RICTOR within a circRNA-miRNA-mRNA network, and its level correlates positively with ESR/CRP (and RF).
Confidence score:

0.4032
Other information
Title:

Profiling of differentially expressed circRNAs and functional prediction in peripheral blood mononuclear cells from patients with rheumatoid arthritis.

Journal: Annals of medicine
Published: 2023
PubMed ID: 36661308
Study type:

combined biological and clinical study
Data availability: The datasets used and analysed during this study are available from the corresponding author on reasonable request.
Code availability: -