circRNA basic information
circBase ID: hsa_circ_0000028
Name: hsa_circ_SNIP1
Synonym: circUSP48
Host Gene: -
Genomic location(hg19): chr1:22041881-22048257:-
Genomic location(hg38): chr1:21715388-21721764:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0009807
MONDO name: osteosarcoma
Disease details: osteosarcoma / OS
Disease DO ID:
3347
Disease MeSH ID:
D012516
Disease NCIt ID:
C9145
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

OS tissues; adjacent normal tissues

Cell lines:

MG-63; 143B; U2OS; Saos-2; hFOB1.19

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: SNIP1, Ago2
Associated microRNA: miR-335
Biological function: promotes osteosarcoma malignancy, proliferation, migration and invasion; silencing inhibits tumor growth in vivo
Molecular mechanism: ceRNA sponging miR-335 to upregulate SNIP1
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); ceRNA regulation (promotes)

Detected method:
Q
M
Validation methods:

RT-qPCR; Microarray; Sanger Sequencing; RNase R Treatment; FISH / smFISH; divergent primers PCR; RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; Transfection; CCK8; EdU Staining; Colony Formation Assay; Wound Healing Assay; Transwell Assay; Western Blot; IHC (Immunohistochemistry); In Vivo Animal Model; Bioinformatics Analysis; Clinical Sample Validation

Clinical significance:

-

Description:

circUSP48 is up-regulated in osteosarcoma tissues and cell lines and functions as an oncogenic circRNA. It promotes proliferation, migration and invasion by sponging miR-335 and thereby upregulating SNIP1; circUSP48 knockdown suppresses xenograft tumor growth.

Confidence score:

0.8635

Other information
Title:

Silencing circUSP48 suppresses osteosarcoma progression by regulating the miR-335/ smad nuclear interacting protein 1 pathway.

Journal: Journal of clinical laboratory analysis
Published: 2023
PubMed ID: 36597862
Study type:

combined biological and clinical study

Data availability: available from the corresponding author on reasonable request
Code availability: -