circRNA basic information
circBase ID: hsa_circ_0049447
Name: hsa_circ_RAB3D
Synonym: circ_0049447
Host Gene: RAB3D
Genomic location(hg19): chr19:11446122-11448136:-
Genomic location(hg38): chr19:11335446-11337460:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

GC tissues; non-tumorous tissues; adjacent normal tissues

Cell lines:

AGS; HGC-27; MGC-803

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: PTPRD, beta-catenin, wnt1
Associated microRNA: miR-324-5p
Biological function: inhibits proliferation, migration, invasion, and epithelial-mesenchymal transition; suppresses tumor growth in vivo
Molecular mechanism: ceRNA/miRNA sponge mechanism via binding miR-324-5p; associated with increased PTPRD and inhibition of beta-catenin and wnt1
Biological pathway or process:

proliferation (inhibits); migration (inhibits); invasion (inhibits); EMT (inhibits); Wnt/beta-catenin (inhibits); ceRNA regulation (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; Sanger Sequencing; Transfection; CCK8; Colony Formation Assay; Transwell Assay; Western Blot; Luciferase Reporter Assay; Clinical Sample Validation; ROC Analysis; Survival Analysis; In Vivo Animal Model; IHC (Immunohistochemistry)

Clinical significance:

AUC 0.838 with sensitivity 82.3% and specificity 77.2% for distinguishing GC tissues; no significant difference in overall survival between low and high expression groups

Description:

circ_0049447 (derived from RAB3D exons) is down-regulated in gastric cancer and acts as a tumor suppressor by inhibiting proliferation, migration, invasion, and EMT in GC cells and xenografts. Mechanistically, it binds (sponges) miR-324-5p (validated by luciferase), with associated upregulation of PTPRD and inhibition of beta-catenin/wnt1 signals. It shows diagnostic potential (ROC AUC 0.838) but no significant association with overall survival in this cohort.

Confidence score:

0.7831

Other information
Title:

Circ_0049447 acts as a tumor suppressor in gastric cancer through reducing proliferation, migration, invasion, and epithelial-mesenchymal transition.

Journal: Chinese medical journal
Published: 2021
PubMed ID: 33883408
Study type:

combined biological and clinical study

Data availability: -
Code availability: -