circRNA basic information
circBase ID: hsa_circ_0112434
Name: hsa_circ_KDM1A
Synonym: circ 2a_2 / circ_0112434
Host Gene: KDM1A
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005061
MONDO name: lung adenocarcinoma
Disease details: lung adenocarcinoma / LUAD
Disease DO ID:
3910
Disease MeSH ID:
C538231
Disease NCIt ID:
C3512
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

serum

Cell lines:

PC9; PSAE; A549

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UN
Associated gene: -
Associated microRNA: -
Biological function: participates in intercellular communication (exported and efficiently taken up; strongest uptake among tested circLSD1 RNAs)
Molecular mechanism: released extracellularly (EVs/RNP-associated) and transferred to recipient cells; can be detected in patient serum
Biological pathway or process:

other pathway/process (other)

Detected method:
Q
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RT-qPCR; FISH / smFISH; RNase R Treatment; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; Transfection; Bioinformatics Analysis

Clinical significance:

detected in serum of T-PLL patients but not in healthy donors

Description:

hsa_circ_0112434 (circ 2a_2) is a KDM1A-derived circRNA that is mainly cytoplasmic, can be released extracellularly (EV/RNP-associated), and is efficiently taken up by recipient lung cells. It is also detectable in serum from T-PLL patients but not healthy donors, supporting its presence as a circulating extracellular RNA.

Confidence score:

0.695

Other information
Title:

Vesicular Release and Uptake of Circular LSD1-RNAs from Non-Cancer and Cancer Lung Cells.

Journal: International journal of molecular sciences
Published: 2023
PubMed ID: 37762282
Study type:

biological research

Data availability: -
Code availability: -