circRNA basic information
circBase ID: hsa_circ_0008494
Name: hsa_circ_ARID1A
Synonym: circARID1A
Host Gene: ARID1A
Genomic location(hg19): chr1:27056141-27059283:+
Genomic location(hg38): chr1:26729650-26732792:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer / GC
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

GC tissues; adjacent tissues / noncancerous tissues; paraffin-embedded GC tissues; tissue microarray (TMA)

Cell lines:

SGC7901; BGC823; HGC-27; GES-1; AGS; MKN-74; 293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: IGF2BP3, SLC7A5 mRNA
Associated microRNA: -
Biological function: promotes gastric cancer cell proliferation/growth in vitro and in vivo
Molecular mechanism: acts as a scaffold to facilitate IGF2BP3-SLC7A5 mRNA interaction, forms a circARID1A-IGF2BP3-SLC7A5 RNA-protein ternary complex, enhances SLC7A5 mRNA stability, and activates AKT/mTOR signaling
Biological pathway or process:

proliferation (promotes); PI3K/AKT/mTOR (promotes); mRNA stability (promotes)

Detected method:
Q
H
S
Validation methods:

RIP (RNA Immunoprecipitation); RNA-seq; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RNase R Treatment; Actinomycin D / DRB Stability Assay; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; ISH (In Situ Hybridization); RT-qPCR; RNA Pull-Down; IF (Immunofluorescence); Transfection; CCK8; EdU Staining; Colony Formation Assay; Western Blot; In Vivo Animal Model; IHC (Immunohistochemistry); Survival Analysis; Bioinformatics Analysis

Clinical significance:

upregulated in GC and positively correlated with tumor length, tumor volume, TNM stage and T stage; not associated with overall survival

Description:

CircARID1A is up-regulated in gastric cancer and mainly localizes to the cytoplasm. It binds IGF2BP3 and SLC7A5 mRNA to form a ternary RNA-protein complex that increases SLC7A5 mRNA stability and promotes GC proliferation through AKT/mTOR signaling.

Confidence score:

0.8719

Other information
Title:

CircARID1A binds to IGF2BP3 in gastric cancer and promotes cancer proliferation by forming a circARID1A-IGF2BP3-SLC7A5 RNA-protein ternary complex.

Journal: Journal of experimental & clinical cancer research : CR
Published: 2022
PubMed ID: 35986300
Study type:

combined biological and clinical study

Data availability: 10.1186/s13046-022-02466-3
Code availability: -