circRNA basic information
circBase ID: hsa_circ_0002360
Name: hsa_circ_RUNX1
Synonym: circRUNX1
Host Gene: RUNX1
Genomic location(hg19): chr21:36206706-36231875:-
Genomic location(hg38): chr21:34834409-34859578:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005580
MONDO name: esophageal squamous cell carcinoma
Disease details: esophageal squamous cell carcinoma / ESCC
Disease DO ID:
3748
Disease MeSH ID:
C562729; D000077277
Disease NCIt ID:
C4024
Disease ICD11 ID:
1417891145
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

ESCC tissues; paracancerous tissues; normal esophageal tissues

Cell lines:

HEEC; KYSE450; EC109; TE1; KYSE70; KYSE150; HEK-293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: FOXP3, IGF2BP2, Ago2
Associated microRNA: miR-449b-5p
Biological function: promotes ESCC cell proliferation, migration, invasion and metastasis
Molecular mechanism: circRUNX1 functions as a ceRNA to sponge miR-449b-5p and increase FOXP3 expression; IGF2BP2 binds circRUNX1 and prevents its degradation (m6A-dependent).
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); metastasis (promotes); ceRNA regulation (promotes)

Detected method:
Q
S
Validation methods:

circRNA-seq; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; RNA-seq; RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; Transfection; CCK8; EdU Staining; Colony Formation Assay; Transwell Assay; Wound Healing Assay; Western Blot; IHC (Immunohistochemistry); In Vivo Animal Model; H&E Staining; ROC Analysis; Bioinformatics Analysis; Clinical Sample Validation

Clinical significance:

circRUNX1 was associated with TNM stage and differentiation grade; ROC AUC 0.894 indicates it could distinguish cancer and paracancerous tissues in ESCC patients; potential diagnostic marker and therapeutic target

Description:

circRUNX1 is up-regulated in ESCC and promotes proliferation and metastasis. It acts as a ceRNA by sponging miR-449b-5p to increase FOXP3 expression, and its stability is enhanced by IGF2BP2 binding in an m6A-dependent manner. circRUNX1 shows diagnostic potential (ROC AUC 0.894) and correlates with advanced TNM stage and poor differentiation.

Confidence score:

0.8837

Other information
Title:

IGF2BP2-induced circRUNX1 facilitates the growth and metastasis of esophageal squamous cell carcinoma through miR-449b-5p/FOXP3 axis.

Journal: Journal of experimental & clinical cancer research : CR
Published: 2022
PubMed ID: 36522683
Study type:

combined biological and clinical study

Data availability: Data generated or analyzed during this study are available from the corresponding authors on reasonable request.
Code availability: -