circRNA basic information
circBase ID: hsa_circ_0006401
Name: hsa_circ_COL6A3
Synonym: circCOL6A3
Host Gene: COL6A3
Genomic location(hg19): chr2:238242092-238245175:-
Genomic location(hg38): chr2:237333449-237336532:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer / GC
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

GC tissues; matched non-GC tissues

Cell lines:

BGC-823; MKN-45; AGS; SGC-7901; GES-1

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: COL6A3 mRNA, COL6A3
Associated microRNA: miR-3064-5p
Biological function: Promotes gastric cancer cell proliferation and migration, exacerbates malignancy, and suppresses apoptosis when overexpressed; circCOL6A3 knockdown restricts proliferation and migration and increases apoptosis.
Molecular mechanism: circCOL6A3 functions as a cytoplasmic ceRNA that sponges miR-3064e5p, thereby relieving miR-3064e5p-mediated suppression of COL6A3 mRNA.
Biological pathway or process:

ceRNA regulation (promotes); proliferation (promotes); migration (promotes); apoptosis (inhibits); metastasis (promotes)

Detected method:
Q
M
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; RT-qPCR; Microarray; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; Transfection; CCK8; EdU Staining; Transwell Assay; Western Blot; Bioinformatics Analysis

Clinical significance:

May provide theoretical grounds and a potential therapeutic target for future clinical diagnosis and treatment of gastric cancer patients.

Description:

circCOL6A3 (hsa_circ_0006401), derived from COL6A3, is up-regulated in gastric cancer cells and acts as an oncogenic circRNA. It is mainly cytoplasmic and functions as a ceRNA by binding miR-3064e5p, thereby derepressing COL6A3 mRNA and promoting proliferation and migration while reducing apoptosis of GC cells.

Confidence score:

0.8118

Other information
Title:

A circular RNA derived from COL6A3 functions as a ceRNA in gastric cancer development.

Journal: Biochemical and biophysical research communications
Published: 2019
PubMed ID: 31122696
Study type:

combined biological and bioinformatics study

Data availability: GSE100170; Supplementary data: https://doi.org/10.1016/j.bbrc.2019.05.079
Code availability: -