circRNA basic information
circBase ID: hsa_circ_0065378
Name: hsa_circ_PLXNB1
Synonym: circ_PLXNB1
Host Gene: PLXNB1
Genomic location(hg19): chr3:48459319-48459772:-
Genomic location(hg38): chr3:48417910-48418363:-
Subcellular localization: nucleus and cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

CRC tumor tissues; adjacent normal tissues; CRC tissues; adjacent nontumor tissues

Cell lines:

FHC; HT29; SW480; HCT-116; SW620

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: TUSC1
Associated microRNA: miR-4701-5p
Biological function: circ_PLXNB1 inhibits CRC cell proliferation, invasion, migration and EMT, induces G1-phase cell-cycle arrest, and impedes xenograft tumor growth.
Molecular mechanism: circ_PLXNB1 functions as a ceRNA by binding miR-4701-5p, thereby upregulating TUSC1 and inactivating the TGF-beta/Smad pathway to suppress CRC progression.
Biological pathway or process:

proliferation (inhibits); migration (inhibits); invasion (inhibits); EMT (inhibits); cell cycle (other); TGF-beta/SMAD (inhibits); ceRNA regulation (other)

Detected method:
Q
S
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RT-qPCR; RNA-seq; Clinical Sample Validation; Nuclear-Cytoplasmic Fractionation; Bioinformatics Analysis; Transfection; MTT; Cell Cycle Assay; Transwell Assay; Western Blot; Luciferase Reporter Assay; RNA Pull-Down; RIP (RNA Immunoprecipitation); In Vivo Animal Model

Clinical significance:

circ_PLXNB1 has close association with distant metastasis and lymph node metastasis in CRC patients.

Description:

circ_PLXNB1/hsa_circ_0065378 is downregulated in colorectal cancer tissues and cell lines. Its overexpression suppresses CRC proliferation, invasion, migration, EMT and xenograft tumor growth by sponging miR-4701-5p, increasing TUSC1, and inactivating the TGF-beta/Smad pathway. Clinically, circ_PLXNB1 expression is associated with distant metastasis and lymph node metastasis.

Confidence score:

0.8351

Other information
Title:

Circular RNA circ_0065378 upregulates tumor suppressor candidate 1 by competitively binding with miR-4701-5p to alleviate colorectal cancer progression.

Journal: Journal of gastroenterology and hepatology
Published: 2022
PubMed ID: 35434854
Study type:

combined biological and clinical study

Data availability: The datasets used during the present study are available from the corresponding author upon reasonable request.
Code availability: -