circRNA basic information
circBase ID: hsa_circ_0139996
Name: hsa_circ_REPS2
Synonym: circREPS2
Host Gene: REPS2
Genomic location(hg19): chrX:17121840-17165626:.
Genomic location(hg38): chrX:17103717-17147503:.
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

GC tissues; matched noncancerous tissues; adjacent normal tissues

Cell lines:

AGS; BGC-823; SGC-7901; MKN-28; MKN-45; MGC-803; HEK293T; GES-1

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: RUNX3, beta-catenin
Associated microRNA: miR-558
Biological function: inhibits gastric cancer cell proliferation, migration, invasion, EMT and tumorigenesis
Molecular mechanism: Acts as a miR-558 sponge to upregulate RUNX3 and inactivate beta-catenin signaling.
Biological pathway or process:

Wnt/beta-catenin (inhibits); proliferation (inhibits); migration (inhibits); invasion (inhibits); EMT (inhibits); ceRNA regulation (promotes)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; RNase R Treatment; Sanger Sequencing; Back-Splice Junction PCR / divergent primers PCR; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Luciferase Reporter Assay; RNA Pull-Down; RIP (RNA Immunoprecipitation); Transfection; CCK8; EdU Staining; Colony Formation Assay; Transwell Assay; Wound Healing Assay; Western Blot; IF (Immunofluorescence); In Vivo Animal Model; Bioinformatics Analysis; Clinical Sample Validation

Clinical significance:

Low expression of circREPS2 was associated with a higher tumor-node-metastasis (TNM) stage, poor tumor differentiation, and larger tumor size in GC patients.

Description:

circREPS2 (hsa_circ_0139996) is down-regulated in gastric cancer tissues and cell lines and functions as a tumor suppressor. It sponges miR-558 to upregulate RUNX3, thereby inhibiting Wnt/beta-catenin signaling and suppressing proliferation, migration, invasion, EMT, and xenograft tumor growth.

Confidence score:

0.852

Other information
Title:

Circular RNA circREPS2 Acts as a Sponge of miR-558 to Suppress Gastric Cancer Progression by Regulating RUNX3/beta-catenin Signaling.

Journal: Molecular therapy. Nucleic acids
Published: 2020
PubMed ID: 32721878
Study type:

combined biological and clinical study

Data availability: https://doi.org/10.1016/j.omtn.2020.06.026
Code availability: -