circRNA basic information
circBase ID: -
Name: hsa_circ_SOX5
Synonym: chr12:23998917|24048958
Host Gene: SOX5
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
 0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma
Disease DO ID:
 684, 686
Disease MeSH ID:
 D006528
Disease NCIt ID:
 C3099
Disease ICD11 ID:
 1294035808
Disease OMIM ID:
 114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

liver
Cell lines:

-
In vivo animal model:

-
circRNA-disease information
Expression pattern:
DN
Associated gene: SOX5
Associated microRNA: -
Biological function: -
Molecular mechanism: -
Biological pathway or process:

not specified
Detected method:
S
Validation methods:

RNA-seq; Bioinformatics Analysis
Clinical significance:

might be the potential biomarker targets for HCC
Description:

A newly identified circRNA at chr12:23998917-24048958 (host gene SOX5) is down-regulated in HCC and proposed as a potential biomarker candidate based on sequencing/comparative analysis across patients.
Confidence score:

0.1768
Other information
Title:

CCRDB: a cancer circRNAs-related database and its application in hepatocellular carcinoma-related circRNAs.

Journal: Database : the journal of biological databases and curation
Published: 2019
PubMed ID: 31219565
Study type:

bioinformatics study
Data availability: -
Code availability: -