circRNA basic information
circBase ID: -
Name: hsa_circ_FNDC3B
Synonym: CircRNA_103516
Host Gene: FNDC3B
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: nucleus
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005011
MONDO name: Crohn disease
Disease details: Crohn's disease
Disease DO ID:
8778
Disease MeSH ID:
D003424
Disease NCIt ID:
C2965
Disease ICD11 ID:
1267652425
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

peripheral blood; peripheral blood monocytes; PBMCs; intestinal mucosal samples; inflamed mucosa; colonic mucosa

Cell lines:

THP1; THP-1; HUVECs; 293 T

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: Hu antigen R (HuR), FNDC3B, TGF-beta, TGFbetaRII, SMAD2/3, p-SMAD2/3
Associated microRNA: -
Biological function: circFNDC3B is increased in active CD and regulates monocyte-macrophage function; circFNDC3B knockdown promotes FNDC3B expression, M2 macrophage activation, monocyte adhesion, and transmigration, while no significant effects were observed on proliferation, apoptosis, or phagocytosis.
Molecular mechanism: circFNDC3B competitively binds HuR and prevents HuR binding to FNDC3B mRNA, thereby lowering FNDC3B translation and regulating the FNDC3B/TGFbeta signaling axis during M2 macrophage activation.
Biological pathway or process:

TGF-beta/SMAD (other); macrophage polarization (other); immune regulation (other); inflammation (other); migration (other); other pathway/process (other)

Detected method:
Q
H
M
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RT-qPCR; Microarray; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; RIP (RNA Immunoprecipitation); RNA Pull-Down; Transfection; CCK8; Annexin V/PI Flow Cytometry; Flow Cytometry(Non-apoptosis/cycle); Transwell Assay; Western Blot; Bioinformatics Analysis

Clinical significance:

circFNDC3B expression is positively correlated with CD disease activity and severity indices, including CDAI, SES-CD, and CRP; it may serve as a potential therapeutic target for IBD.

Description:

circFNDC3B is a human FNDC3B-derived circRNA upregulated in peripheral blood monocytes and inflamed mucosa of active Crohn's disease. It is mainly nuclear and regulates monocyte-macrophage behavior through a HuR/FNDC3B/TGFbeta mechanism; circFNDC3B knockdown promotes FNDC3B expression, M2 macrophage polarization, adhesion, and transmigration. Clinically, higher circFNDC3B levels correlate positively with CD activity and inflammation indices.

Confidence score:

0.8237

Other information
Title:

Circular RNA circFNDC3B Modulates M2 Macrophage Activation and Intestinal Inflammation in Crohn's Disease.

Journal: FASEB journal : official publication of the Federation of American Societies for Experimental Biology
Published: 2026
PubMed ID: 41665194
Study type:

combined biological and clinical study

Data availability: Included in article; Supporting Information section; Figure S4; Table S1; Table S2; Video S1: fsb271498-sup-0007-VideoS1.mp4
Code availability: -