circRNA basic information
circBase ID: hsa_circ_0001955
Name: hsa_circ_CSNK1G1
Synonym: circ-CSNK1G1 / circ_0001955
Host Gene: CSNK1G1
Genomic location(hg19): chr15:64495280-64508912:-
Genomic location(hg38): chr15:64203081-64216713:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005494
MONDO name: triple-negative breast carcinoma
Disease details: triple-negative breast cancer / TNBC
Disease DO ID:
0060081
Disease MeSH ID:
D064726
Disease NCIt ID:
C71732
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumor tissues; non-cancer tissues

Cell lines:

MCF-10 A; MDA-MB-231; MDA-MB-453; MDA-MB-468; BT-549

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: LDHA
Associated microRNA: miR-28-5p
Biological function: promotes cell proliferation, migration, invasion and glycolysis energy metabolism; inhibits apoptosis; promotes tumor growth in vivo
Molecular mechanism: ceRNA mechanism: circ-CSNK1G1 sponges miR-28-5p to positively regulate LDHA
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); glycolysis (promotes); apoptosis (inhibits); ceRNA regulation (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; RNase R Treatment; Nuclear-Cytoplasmic Fractionation; Transfection; MTT; Colony Formation Assay; Annexin V/PI Flow Cytometry; Transwell Assay; Luciferase Reporter Assay; Western Blot; In Vivo Animal Model; IHC (Immunohistochemistry); Clinical Sample Validation; Survival Analysis; Bioinformatics Analysis

Clinical significance:

high expression of circ-CSNK1G1 was associated with lower overall survival within 5 years

Description:

circ-CSNK1G1 is up-regulated in TNBC tissues and cell lines and mainly localizes in the cytoplasm. It promotes TNBC malignant phenotypes (proliferation, migration, invasion, glycolysis) and tumor growth by sponging miR-28-5p to increase LDHA expression; higher circ-CSNK1G1 is associated with worse overall survival.

Confidence score:

0.8069

Other information
Title:

Circ-CSNK1G1 promotes cell proliferation, migration, invasion and glycolysis metabolism during triple-negative breast cancer progression by modulating the miR-28-5p/LDHA pathway.

Journal: Reproductive biology and endocrinology : RB&E
Published: 2022
PubMed ID: 36109751
Study type:

combined biological and clinical study

Data availability: GSE101123; 10.1186/s12958-022-00998-z
Code availability: -