circRNA basic information
circBase ID: -
Name: hsa_circ_CRKL
Synonym: circCRKL
Host Gene: CRKL
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0011996
MONDO name: chronic myelogenous leukemia, BCR-ABL1 positive
Disease details: chronic myeloid leukemia / CML
Disease DO ID:
0081088, 8552
Disease MeSH ID:
-
Disease NCIt ID:
C3174
Disease ICD11 ID:
-
Disease OMIM ID:
608232
Species: Human
Species details: Homo sapiens
Tissue specimen:

bone marrow

Cell lines:

K562; K562/G01; KCL22; SupB15; THP-1; TK6; 293 T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: BCR-ABL, ABL, AGO2, Wnt/beta-catenin signaling pathway, CTNNB1, c-Myc
Associated microRNA: miR-877-5p
Biological function: promotes CML cell proliferation; promotes malignant progression in vivo; augments susceptibility of resistant cells to imatinib when knocked down
Molecular mechanism: ceRNA/miRNA sponge: circCRKL sponges miR-877-5p to increase BCR-ABL (ABL) mRNA/protein; involves AGO2-containing RISC
Biological pathway or process:

proliferation (promotes); cell cycle (promotes); apoptosis (inhibits); ceRNA regulation (promotes); Wnt/beta-catenin (promotes); drug resistance (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; Sanger Sequencing; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Transfection; CCK8; Colony Formation Assay; Cell Cycle Assay; Annexin V/PI Flow Cytometry; Luciferase Reporter Assay; RNA Pull-Down; RIP (RNA Immunoprecipitation); Western Blot; IF (Immunofluorescence); In Vivo Animal Model; H&E Staining; Clinical Sample Validation; Bioinformatics Analysis

Clinical significance:

-

Description:

circCRKL is up-regulated in CML (especially BCR-ABL+ cells) and predominantly localizes to the cytoplasm. It promotes CML proliferation by sponging miR-877-5p in an AGO2-associated manner, thereby increasing BCR-ABL/ABL expression; circCRKL knockdown also increases imatinib sensitivity, potentially involving Wnt/beta-catenin signaling changes.

Confidence score:

0.8491

Other information
Title:

circCRKL, a circRNA derived from CRKL, regulates BCR-ABL via sponging miR-877-5p to promote chronic myeloid leukemia cell proliferation.

Journal: Journal of translational medicine
Published: 2022
PubMed ID: 36058922
Study type:

combined biological and clinical study

Data availability: Supplementary material available at 10.1186/s12967-022-03586-2
Code availability: -