circRNA basic information
circBase ID: hsa_circ_0005045
Name: hsa_circ_RTN4
Synonym: circ_0005045 / hsa_circRNA_0005045
Host Gene: RTN4
Genomic location(hg19): chr2:55214626-55214834:-
Genomic location(hg38): chr2:54987490-54987698:-
Subcellular localization: exosome
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005002
MONDO name: chronic obstructive pulmonary disease
Disease details: chronic obstructive pulmonary disease / COPD
Disease DO ID:
3083
Disease MeSH ID:
D029424
Disease NCIt ID:
C3199
Disease ICD11 ID:
133207228
Disease OMIM ID:
606963
Species: Human
Species details: Homo sapiens
Tissue specimen:

plasma; blood; BALF

Cell lines:

HBE

In vivo animal model:

other disease animal model

circRNA-disease information
Expression pattern:
UP
Associated gene: PRDX2, ELANE, TNF-alpha
Associated microRNA: -
Biological function: Aggravates hallmarks of COPD and promotes inflammation after PM2.5 exposure.
Molecular mechanism: Exosomal circRNA physically binds PRDX2, forms a complex associated with ELANE, and activates PRDX2/ELANE/TNF-alpha signaling to aggravate COPD lesions/inflammation.
Biological pathway or process:

inflammation (promotes); other pathway/process (promotes)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; Sanger Sequencing; Clinical Sample Validation; RIP (RNA Immunoprecipitation); Co-IP; Western Blot; ELISA; IHC (Immunohistochemistry); In Vivo Animal Model; H&E Staining; Bioinformatics Analysis; ROC Analysis

Clinical significance:

Relatively high exosomal hsa_circ_0005045 expression characterizes PM2.5 exposure-sensitive COPD patients at risk of acute exacerbation and is used as a feature in machine learning prediction models.

Description:

This study identifies exosomal hsa_circ_0005045 as PM2.5-inducible and elevated in COPD patient plasma after exposure. It binds PRDX2 in exosomes and is linked to PRDX2/ELANE/TNF-alpha inflammatory signaling that aggravates COPD-like lesions, and its higher level helps characterize PM2.5-sensitive COPD patients at risk of aeCOPD.

Confidence score:

0.8323

Other information
Title:

Prediction of COPD acute exacerbation in response to air pollution using exosomal circRNA profile and Machine learning.

Journal: Environment international
Published: 2022
PubMed ID: 36041244
Study type:

combined biological and clinical study

Data availability: GSE150251
Code availability: -