circRNA basic information
circBase ID: hsa_circ_0063513
Name: hsa_circ_RanGAP1
Synonym: circRanGAP1 / circ_0063513
Host Gene: RanGAP1
Genomic location(hg19): chr22:41641614-41664160:-
Genomic location(hg38): chr22:41245610-41268156:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma / HCC
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tissues; matched non-tumor tissues

Cell lines:

L02; PLC/PRF/5; Hep3B; HepG2; MHCC97L; MHCC97H; HCCLM3; Huh7

In vivo animal model:

cell line-derived xenograft; syngeneic model

circRNA-disease information
Expression pattern:
UP
Associated gene: NRAS, ERK, AGO2
Associated microRNA: miR-27b-3p
Biological function: promotes proliferation, migration, invasion and tumor growth/metastasis; regulates tumor-associated macrophage infiltration
Molecular mechanism: ceRNA/miRNA sponge: circRanGAP1 sponges miR-27b-3p to relieve repression of NRAS, activating ERK phosphorylation (MAPK signaling) and promoting HCC progression; associated with TAM infiltration
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); metastasis (promotes); MAPK (promotes); ERK (promotes); ceRNA regulation (promotes); macrophage polarization (other); immune regulation (other)

Detected method:
Q
Validation methods:

RT-qPCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; Transfection; CCK8; Colony Formation Assay; Transwell Assay; Western Blot; IHC (Immunohistochemistry); Flow Cytometry(Non-apoptosis/cycle); In Vivo Animal Model; H&E Staining; Bioinformatics Analysis; Clinical Sample Validation

Clinical significance:

High circRanGAP1 is associated with enlarged tumors and advanced TNM stage; proposed as a potential biomarker in HCC.

Description:

circRanGAP1 (hsa_circ_0063513), derived from RanGAP1, is up-regulated in HCC tissues and cell lines and promotes HCC proliferation, migration, invasion, and in vivo tumor growth/metastasis. It mainly localizes to the cytoplasm and functions as a miR-27b-3p sponge to upregulate NRAS and activate ERK/MAPK signaling, and is linked to increased tumor-associated macrophage infiltration.

Confidence score:

0.8512

Other information
Title:

circRanGAP1/miR-27b-3p/NRAS Axis may promote the progression of hepatocellular Carcinoma.

Journal: Experimental hematology & oncology
Published: 2022
PubMed ID: 36348379
Study type:

combined biological and clinical study

Data availability: available from the corresponding author on reasonable request
Code availability: -