circRNA basic information
circBase ID: hsa_circ_0000042
Name: hsa_circ_EPB41
Synonym: circ-EPB41
Host Gene: EPB41
Genomic location(hg19): chr1:29362337-29365938:+
Genomic location(hg38): chr1:29035825-29039426:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005233
MONDO name: non-small cell lung carcinoma
Disease details: non-small cell lung cancer / NSCLC
Disease DO ID:
3908
Disease MeSH ID:
D002289
Disease NCIt ID:
C2926
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

NSCLC tissues; adjacent non-cancerous lung tissues; tumor tissues; lung tissues

Cell lines:

PC9; A549; H1975; H1650; BEAS-2B; HEK293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: eIF5A, SOX2, OCT-4, Nanog, CD133
Associated microRNA: miR-486-3p, miR-587, miR-595
Biological function: Promotes NSCLC cell proliferation, invasion/metastasis, and stemness/self-renewal; circ-EPB41 silencing induces cell-cycle arrest and suppresses tumor growth in vivo.
Molecular mechanism: Acts as a miRNA sponge (ceRNA) for miR-486-3p, thereby relieving miR-486-3p-mediated repression of eIF5A and enhancing eIF5A-driven stemness programs.
Biological pathway or process:

proliferation (promotes); invasion (promotes); metastasis (promotes); stemness (promotes); ceRNA regulation (promotes)

Detected method:
Q
H
S
Validation methods:

RNA-seq; RNase R Treatment; RT-qPCR; FISH / smFISH; Luciferase Reporter Assay; Bioinformatics Analysis; Transfection; CCK8; Colony Formation Assay; Transwell Assay; Cell Cycle Assay; EdU Staining; Western Blot; IF (Immunofluorescence); In Vivo Animal Model; IHC (Immunohistochemistry); H&E Staining; Survival Analysis; Clinical Sample Validation

Clinical significance:

High circ-EPB41 expression is associated with malignant characteristics and predicts poor overall survival in NSCLC.

Description:

circ-EPB41 is up-regulated in NSCLC and mainly localized in the cytoplasm. It promotes proliferation, invasion/metastasis and cancer stemness by sponging miR-486-3p, thereby increasing eIF5A expression; high circ-EPB41 is associated with worse overall survival.

Confidence score:

0.8157

Other information
Title:

Circular RNA EPB41 expression predicts unfavorable prognoses in NSCLC by regulating miR-486-3p/eIF5A axis-mediated stemness.

Journal: Cancer cell international
Published: 2022
PubMed ID: 35725615
Study type:

combined biological and clinical study

Data availability: 10.1186/s12935-022-02618-7; accession code: H1712024
Code availability: -