circRNA basic information
circBase ID: hsa_circ_0006877
Name: hsa_circ_LDLR
Synonym: circLDLR / circ_0006877
Host Gene: LDLR
Genomic location(hg19): chr19:11230767-11231198:+
Genomic location(hg38): chr19:11230768-11231198:.
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer / CRC
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

CRC tissues; paired adjacent normal tissue samples; normal tissue specimens

Cell lines:

HCT116; HT29; RKO; SW620; HCT8; LoVo; SW480; Caco-2; NCM-460; HEK293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: SOAT1, AGO2
Associated microRNA: miR-30a-3p
Biological function: Promotes CRC cell proliferation, migration, invasion, tumor growth and lung metastasis; increases total cholesterol (T-CHO) and low-density lipoprotein cholesterol (LDL-C) levels.
Molecular mechanism: ceRNA/miRNA sponge: circLDLR competitively binds miR-30a-3p, relieving repression of SOAT1 and promoting malignant progression; associated with AGO2-RISC binding.
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); metastasis (promotes); ceRNA regulation (promotes); lipid metabolism (promotes)

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RNase R Treatment; Actinomycin D / DRB Stability Assay; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; Transfection; CCK8; EdU Staining; Transwell Assay; Western Blot; IHC (Immunohistochemistry); H&E Staining; In Vivo Animal Model; Survival Analysis; Bioinformatics Analysis; Clinical Sample Validation

Clinical significance:

High circLDLR expression is associated with malignant progression/TNM stage and predicts poor prognosis (poorer overall survival) in CRC patients.

Description:

circLDLR is up-regulated in colorectal cancer and promotes malignant progression (proliferation, migration/invasion, tumor growth and lung metastasis). It acts as a ceRNA by sponging miR-30a-3p to increase SOAT1 expression, which is linked to elevated cellular cholesterol (T-CHO and LDL-C). High circLDLR expression correlates with advanced clinical features and poorer overall survival.

Confidence score:

0.8932

Other information
Title:

Circular RNA circLDLR facilitates cancer progression by altering the miR-30a-3p/SOAT1 axis in colorectal cancer.

Journal: Cell death discovery
Published: 2022
PubMed ID: 35821230
Study type:

combined biological and clinical study

Data availability: The online version contains supplementary material available at 10.1038/s41420-022-01110-5. For all data requests, please contact the corresponding author.
Code availability: -