circRNA basic information
circBase ID: hsa_circ_0072309
Name: hsa_circ_LIFR
Synonym: circ_0072309
Host Gene: LIFR
Genomic location(hg19): chr5:38523520-38530768:-
Genomic location(hg38): chr5:38523418-38530666:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005494
MONDO name: triple-negative breast carcinoma
Disease details: triple-negative breast cancer / TNBC
Disease DO ID:
0060081
Disease MeSH ID:
D064726
Disease NCIt ID:
C71732
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

adjacent frozen tissues; FFPE tissues; frozen tissues; normal breast samples

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: AGO2, EIF4A3, ELAVL1 (HuR), EWSR1, FMR1 (FMRP), FUS, IGF2BP1, IGF2BP2, IGF2BP3, LIN28A, LIN28B, PTBP1, U2AF2 (U2AF)
Associated microRNA: -
Biological function: Acts as a risk biomarker candidate distinguishing TNBC from non-cancer controls; may mediate gene regulation via interactions with RNA-binding proteins.
Molecular mechanism: Predicted circRNA-RBP interaction network (CLIP-seq-based) with enrichment in transcriptional/post-transcriptional gene regulation pathways.
Biological pathway or process:

other pathway/process (other)

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; Clinical Sample Validation; ROC Analysis; Bioinformatics Analysis

Clinical significance:

hsa_circ_0072309 expression distinguished TNBC patients from patients without cancer with AUC of 0.78 (FFPE) and 0.81 (frozen tissue), suggesting a potential risk biomarker.

Description:

hsa_circ_0072309 is consistently down-regulated in TNBC across RNA-seq and RT-qPCR validation cohorts and can discriminate TNBC from non-cancer breast samples (AUC ~0.78-0.81). Its putative role is linked to circRNA-RBP interactions, with predicted RBPs enriched in cancer-related gene regulation pathways.

Confidence score:

0.5047

Other information
Title:

Triple-Negative Breast Cancer circRNAome Reveals Hsa_circ_0072309 as a Potential Risk Biomarker.

Journal: Cancers
Published: 2022
PubMed ID: 35805051
Study type:

combined biological and clinical study

Data availability: PRJNA808398
Code availability: -