circRNA basic information
circBase ID: hsa_circ_0006117
Name: hsa_circ_PTPRA
Synonym: circPTPRA
Host Gene: PTPRA
Genomic location(hg19): chr20:2944917-2945848:+
Genomic location(hg38): chr20:2964271-2965202:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0004986
MONDO name: urinary bladder carcinoma
Disease details: bladder cancer
Disease DO ID:
4007
Disease MeSH ID:
-
Disease NCIt ID:
C4912
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

BC tissues; adjacent noncancerous bladder epithelial tissues

Cell lines:

EJ; T24T; HEK293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: IGF2BP1, MYC, FSCN1
Associated microRNA: miR-636
Biological function: Suppresses bladder cancer progression by inhibiting proliferation, migration, invasion, and metastasis.
Molecular mechanism: circPTPRA binds IGF2BP1 (KH3/KH4 domains) and blocks IGF2BP1 recognition/binding to m6A-modified target mRNAs (e.g., MYC and FSCN1), reducing their mRNA stability.
Biological pathway or process:

proliferation (inhibits); migration (inhibits); invasion (inhibits); metastasis (inhibits); cell cycle (inhibits); mRNA stability (inhibits); m6A modification (other)

Detected method:
Q
S
Validation methods:

RT-qPCR; RNA-seq; Bioinformatics Analysis; Clinical Sample Validation; Survival Analysis; RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; Transfection; Western Blot; Cell Cycle Assay; Transwell Assay; FISH / smFISH; IF (Immunofluorescence); IHC (Immunohistochemistry); Actinomycin D / DRB Stability Assay; In Vivo Animal Model

Clinical significance:

Low level of circPTPRA was significantly associated with poor overall survival of 64 patients with BC.

Description:

circPTPRA is down-regulated in bladder cancer and functions as a tumor suppressor. It binds the m6A reader IGF2BP1 (via KH3/KH4), interferes with IGF2BP1 recognition of m6A-modified RNAs, and reduces stability/expression of oncogenic targets such as MYC and FSCN1, thereby inhibiting proliferation, migration, invasion, and metastasis.

Confidence score:

0.8554

Other information
Title:

CircPTPRA blocks the recognition of RNA N6-methyladenosine through interacting with IGF2BP1 to suppress bladder cancer progression.

Journal: Molecular cancer
Published: 2021
PubMed ID: 33853613
Study type:

combined biological and clinical study

Data availability: Supplementary material available at 10.1186/s12943-021-01359-x
Code availability: -