circRNA basic information
circBase ID: hsa_circ_0000994
Name: hsa_circ_SLC8A1
Synonym: circSLC8A1 / circ-SLC8A1
Host Gene: SLC8A1
Genomic location(hg19): chr2:40655612-40657444:-
Genomic location(hg38): chr2:40428472-40430304:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005068
MONDO name: myocardial infarction
Disease details: myocardial infarction / MI
Disease DO ID:
5844
Disease MeSH ID:
D009203
Disease NCIt ID:
C27996
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

peripheral blood

Cell lines:

AC16

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: Caspase3, cyto c
Associated microRNA: hsa-miR-1202, hsa-miR-27a-3p, hsa-miR-27b-3p, hsa-miR-30d-3p, hsa-miR-628-5p
Biological function: promotes mitochondrial fission; promotes apoptosis under oxidative stress
Molecular mechanism: circSLC8A1 modulates oxidative stress-associated mitochondrial fission to affect mitochondrial apoptosis (Caspase3, cyto c); predicted circRNA-miRNA-mRNA network also reported
Biological pathway or process:

apoptosis (promotes); mitochondrial function (other); other pathway/process (other)

Detected method:
Q
S
Validation methods:

circRNA-seq; RNase R Treatment; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RT-qPCR; Clinical Sample Validation; ROC Analysis; Bioinformatics Analysis; Transfection; TUNEL; Western Blot; RNA-seq

Clinical significance:

circSLC8A1 has the best ROC in the verification of clinical samples

Description:

circSLC8A1 is up-regulated in MI peripheral blood and in an oxidative-stress AC16 injury model. Functionally, circSLC8A1 promotes mitochondrial fission and sensitizes cardiomyocytes to apoptosis under oxidative stress, with changes in Caspase3 and cyto c, and it shows strong diagnostic value by ROC analysis.

Confidence score:

0.7921

Other information
Title:

The Particular Expression Profiles of Circular RNA in Peripheral Blood of Myocardial Infarction Patients by RNA Sequencing.

Journal: Frontiers in cardiovascular medicine
Published: 2022
PubMed ID: 35734281
Study type:

combined biological and clinical study

Data availability: https://www.frontiersin.org/articles/10.3389/fcvm.2022.810257/full#supplementary-material
Code availability: -