circRNA basic information
circBase ID: hsa_circ_0004846
Name: hsa_circ_SAMD4A
Synonym: circSAMD4
Host Gene: SAMD4A
Genomic location(hg19): chr14:55168779-55169298:+
Genomic location(hg38): chr14:54702061-54702580:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0002492
MONDO name: acute kidney injury
Disease details: acute kidney injury / AKI
Disease DO ID:
3021
Disease MeSH ID:
D058186
Disease NCIt ID:
C26808
Disease ICD11 ID:
476391827
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

kidney tissues; renal biopsy specimens; renal cortical tissue

Cell lines:

HK-2; 293T

In vivo animal model:

other disease animal model

circRNA-disease information
Expression pattern:
UP
Associated gene: CIRBP, SRSF3
Associated microRNA: -
Biological function: promotes apoptosis and tubular cell death in iodinated contrast-induced kidney injury
Molecular mechanism: circSAMD4 binds CIRBP and inhibits its nuclear import, promoting cytoplasmic accumulation of CIRBP and apoptosis; circSAMD4 biogenesis is negatively regulated by SRSF3.
Biological pathway or process:

apoptosis (promotes); other pathway/process (other)

Detected method:
Q
H
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; RT-qPCR; FISH / smFISH; RIP (RNA Immunoprecipitation); Transfection; Annexin V/PI Flow Cytometry; Western Blot; Clinical Sample Validation; Nuclear-Cytoplasmic Fractionation; In Vivo Animal Model

Clinical significance:

circSAMD4 expression correlated positively with kidney dysfunction in biopsy-confirmed ATI patients

Description:

circSAMD4 is up-regulated in iodinated contrast-induced kidney injury and promotes renal tubular epithelial cell apoptosis. It binds CIRBP and inhibits its nuclear import, driving CIRBP cytoplasmic accumulation and pro-apoptotic signaling, while SRSF3 downregulation contributes to circSAMD4 upregulation.

Confidence score:

0.7698

Other information
Title:

Dysregulation of SRSF3/circSAMD4/CIRBP Axis Promotes Iodinated Contrast-induced Acute Kidney Injury.

Journal: International journal of biological sciences
Published: 2025
PubMed ID: 41208880
Study type:

combined biological and clinical study

Data availability: -
Code availability: -