circRNA basic information
circBase ID: -
Name: hsa_circ_ATP2B1
Synonym: circATP2B1 / circRNA 000826
Host Gene: ATP2B1
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005005
MONDO name: clear cell renal carcinoma
Disease details: clear cell renal cell carcinoma / ccRCC
Disease DO ID:
4467
Disease MeSH ID:
-
Disease NCIt ID:
C4033
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

-

Cell lines:

786-O; A498; Caki-1

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UN
Associated gene: ERbeta, ATP2B1, FN1 / fibronectin 1
Associated microRNA: miR-204-3p
Biological function: circATP2B1 suppresses ccRCC cell invasion and metastasis; loss of circATP2B1 reverses the anti-invasive and anti-metastatic effects of ERbeta knockdown, while circATP2B1 overexpression blocks ERbeta-promoted invasion.
Molecular mechanism: ERbeta suppresses circATP2B1 transcription through binding the ATP2B1 promoter; circATP2B1 acts as a miR-204-3p reservoir to stabilize miR-204-3p, leading to repression of FN1 expression and reduced ccRCC invasion.
Biological pathway or process:

invasion (inhibits); metastasis (inhibits); ceRNA regulation (other); other pathway/process (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; Bioinformatics Analysis; Transfection; Transwell Assay; RNA Pull-Down; Actinomycin D / DRB Stability Assay; ChIP / ChIP-seq; Luciferase Reporter Assay; Western Blot; In Vivo Animal Model; IHC (Immunohistochemistry)

Clinical significance:

The study suggests that therapeutic targeting of the ERbeta/circATP2B1/miR-204-3p/FN1 pathway may help prevent ccRCC progression; no direct circATP2B1 patient prognostic or diagnostic analysis was reported.

Description:

circATP2B1 is a suppressive circRNA in the ERbeta-driven ccRCC invasion pathway. ERbeta represses circATP2B1 through the ATP2B1 promoter, and reduced circATP2B1 decreases miR-204-3p stability, thereby increasing FN1 expression and promoting invasion and metastasis.

Confidence score:

0.7754

Other information
Title:

ERbeta-Mediated Alteration of circATP2B1 and miR-204-3p Signaling Promotes Invasion of Clear Cell Renal Cell Carcinoma.

Journal: Cancer research
Published: 2018
PubMed ID: 29490945
Study type:

combined biological and clinical study

Data availability: TCGA; circ2Traits; CircNet; StarBase v2.0; OncoLnc
Code availability: -