circRNA basic information
circBase ID: -
Name: hsa_circ_EML5
Synonym: hsa_circ_32883
Host Gene: EML5
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: extracellular vesicle
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer / CRC
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

formalin-fixed paraffin-embedded tissue specimens; FFPE primary CRC samples

Cell lines:

HCT-116; HCT116-R; HCT116-P

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: predicted target genes
Associated microRNA: hsa-miR-130b-5p, hsa-miR-367-5p, hsa-miR-128-3p, hsa-miR-501-5p, hsa-miR-381-3p
Biological function: Upregulated in FOLFOX-resistant CRC cell model and FFPE CRC samples; proposed as a promising biotarget related to chemoresistance.
Molecular mechanism: Predicted circRNA-miRNA-target gene regulatory mechanism involving five predicted miRNAs and target genes enriched in Pathways in Cancer.
Biological pathway or process:

chemoresistance (promotes); ceRNA regulation (other); other pathway/process (other)

Detected method:
Q
M
Validation methods:

RNase R Treatment; Microarray; RT-qPCR; Clinical Sample Validation; Bioinformatics Analysis

Clinical significance:

Promising biotarget for chemoresistant colorectal cancer; upregulated in clinical FFPE CRC samples.

Description:

hsa circ 32883 was upregulated in chemoresistant HCT116 CRC cells and in FFPE CRC clinical samples from chemotherapy responders/nonresponders. The study proposed it as a promising biotarget and predicted a circRNA-miRNA-target gene regulatory relationship, especially involving hsa-miR-501-5p and genes enriched in cancer-related pathways.

Confidence score:

0.5135

Other information
Title:

Identification of differentially expressed circular RNAs in chemoresistant colorectal cancer.

Journal: Epigenomics
Published: 2019
PubMed ID: 31020847
Study type:

combined biological and clinical study

Data availability: GSE120985; GSE28702
Code availability: -