circRNA basic information
circBase ID: hsa_circ_0043691
Name: hsa_circ_NT5C3L
Synonym: cicrNT5C3L
Host Gene: NT5C3L
Genomic location(hg19): chr17:39983677-39983878:-
Genomic location(hg38): chr17:41827425-41827626:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer / GC
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

GC tissues; paired non-cancerous tissue samples; xenograft tumor tissues

Cell lines:

N87; HGC27; AGS; MKN-45; GES-1

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: PBX3, AGO2
Associated microRNA: miR-1294
Biological function: promotes GC cell proliferation, migration, invasion, angiogenesis and glutaminolysis; inhibits apoptosis; promotes tumor growth in vivo
Molecular mechanism: ceRNA/sponging: hsa_circ_0043691 binds miR-1294 to modulate PBX3 expression
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); angiogenesis (promotes); apoptosis (inhibits); glutaminolysis (promotes); ceRNA regulation (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; Transfection; Colony Formation Assay; Wound Healing Assay; Transwell Assay; Annexin V/PI Flow Cytometry; Tube Formation Assay; Western Blot; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); RNA Pull-Down; In Vivo Animal Model; Survival Analysis; Bioinformatics Analysis

Clinical significance:

high hsa_circ_0043691 expression was associated with advanced stage, lymph node metastasis, larger tumor size, and shorter survival in GC patients

Description:

hsa_circ_0043691 is up-regulated in gastric cancer tissues and cell lines and is mainly localized in the cytoplasm. It promotes malignant phenotypes (proliferation, migration/invasion, angiogenesis), enhances glutaminolysis, and supports tumor growth by sponging miR-1294 to upregulate PBX3.

Confidence score:

0.8689

Other information
Title:

Knockdown of hsa_circ_0043691 restrains the progression of gastric cancer by decoying miR-1294 to target pre-leukemia transcription factor 3.

Journal: Journal of clinical laboratory analysis
Published: 2022
PubMed ID: 36371782
Study type:

combined biological and clinical study

Data availability: The datasets used and analyzed during the current study are available from the corresponding author on reasonable request.
Code availability: -