circRNA basic information
circBase ID: hsa_circ_0058092
Name: hsa_circ_FN1
Synonym: -
Host Gene: FN1
Genomic location(hg19): chr2:216238044-216256537:-
Genomic location(hg38): chr2:215373321-215391814:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer / GC
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

gastric cancer tissues; adjacent tissues; tumor tissues; adjacent tissues

Cell lines:

IMR90

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: PODXL, CEBPB
Associated microRNA: hsa-miR-4269
Biological function: Potential oncogene candidate involved in gastric cancer; high expression is associated with invasion and shorter survival; may affect tumorigenesis by acting as competing RNA for hsa-miR-4269 and regulating PODXL.
Molecular mechanism: hsa_circ_0058092 may act as a competing endogenous RNA for hsa-miR-4269 and influence PODXL expression; CEBPB was predicted as a potential transcription factor regulating hsa_circ_0058092.
Biological pathway or process:

ceRNA regulation (promotes); invasion (promotes); PI3K/AKT (other); other pathway/process (other)

Detected method:
Q
S
Validation methods:

RT-qPCR; RNA-seq; Clinical Sample Validation; IHC (Immunohistochemistry); Western Blot; Survival Analysis; Bioinformatics Analysis

Clinical significance:

High expression was significantly associated with degree of invasion in gastric cancer and shorter survival time.

Description:

hsa_circ_0058092 is an up-regulated circRNA in gastric cancer and was selected as a potential oncogene candidate. The study suggests that it may act as a ceRNA for hsa-miR-4269 to influence PODXL, and its high expression is associated with invasion and poorer patient survival.

Confidence score:

0.6257

Other information
Title:

Next-generation sequencing reveals hsa_circ_0058092 being a potential oncogene candidate involved in gastric cancer.

Journal: Gene
Published: 2020
PubMed ID: 31669641
Study type:

combined biological and clinical study

Data availability: TCGA; CistromeDataBrower; circBase; miRanda; miRDB
Code availability: -