circRNA basic information
circBase ID: -
Name: hsa_circ_ZNF609
Synonym: circZNF609
Host Gene: ZNF609
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005105
MONDO name: melanoma
Disease details: melanoma
Disease DO ID:
1909
Disease MeSH ID:
D008545
Disease NCIt ID:
C3224
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

melanoma tissues; primary cutaneous melanoma FFPE samples; metastatic tissue; normal skin tissues

Cell lines:

HMY-1; A2058; A875; LM-MEL-45; HaCaT; 293 T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: FMRP, RAC1 mRNA
Associated microRNA: -
Biological function: inhibits melanoma cell migration and invasion and suppresses lung and liver metastasis
Molecular mechanism: circZNF609 binds the RBP FMRP and promotes FMRP binding to RAC1 mRNA, enhancing FMRP-mediated destabilization of RAC1 mRNA and reducing RAC1 expression
Biological pathway or process:

migration (inhibits); invasion (inhibits); metastasis (inhibits); mRNA stability (inhibits)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RNase R Treatment; Actinomycin D / DRB Stability Assay; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; Transfection; Wound Healing Assay; Transwell Assay; In Vivo Animal Model; H&E Staining; RIP (RNA Immunoprecipitation); RNA Pull-Down; IF (Immunofluorescence); Western Blot; Bioinformatics Analysis; Survival Analysis; Clinical Sample Validation

Clinical significance:

Low circZNF609 abundance is associated with distant metastasis, deeper Breslow depth, and shorter overall survival in cutaneous melanoma patients; circZNF609 is negatively correlated with Breslow depth and clinical stage.

Description:

circZNF609 is down-regulated in acral and cutaneous melanoma and functions as a metastasis suppressor. It localizes mainly in the cytoplasm and binds the RBP FMRP to enhance FMRP-RAC1 mRNA interaction, decreasing RAC1 mRNA stability and RAC1 expression, thereby inhibiting melanoma migration/invasion and in vivo metastasis; low circZNF609 is associated with worse patient survival.

Confidence score:

0.8709

Other information
Title:

FMRP ligand circZNF609 destabilizes RAC1 mRNA to reduce metastasis in acral melanoma and cutaneous melanoma.

Journal: Journal of experimental & clinical cancer research : CR
Published: 2022
PubMed ID: 35534866
Study type:

combined biological and clinical study

Data availability: GSE138711; https://doi.org/10.1186/s13046-022-02357-7
Code availability: -