circRNA basic information
circBase ID: hsa_circ_0006354
Name: hsa_circ_VAMP3
Synonym: circVAMP3
Host Gene: VAMP3
Genomic location(hg19): chr1:7837219-7838229:+
Genomic location(hg38): chr1:7777159-7778169:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005086
MONDO name: renal cell carcinoma
Disease details: renal cell carcinoma / RCC
Disease DO ID:
4450
Disease MeSH ID:
D002292
Disease NCIt ID:
-
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

RCC tissue; normal tissues; tumor samples; adjoining control tissue samples; xenograft tumors

Cell lines:

HK-2; 786-O; Caki-2; A498; ACHN; OS-RC-1; OS-RC-2; HEK293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: LDHA, FGFR1
Associated microRNA: -
Biological function: promotes aerobic glycolysis and proliferation; promotes tumor growth in vivo
Molecular mechanism: circVAMP3 directly binds LDHA and enhances LDHA enzymatic activity by facilitating FGFR1-dependent phosphorylation of LDHA at Y10; does not act as a miRNA sponge
Biological pathway or process:

glycolysis (promotes); proliferation (promotes); oxidative phosphorylation (inhibits); other pathway/process (promotes)

Detected method:
Q
M
Validation methods:

Microarray; Bioinformatics Analysis; RT-qPCR; Clinical Sample Validation; Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; Actinomycin D / DRB Stability Assay; FISH / smFISH; Transfection; RNA Pull-Down; RIP (RNA Immunoprecipitation); IF (Immunofluorescence); Western Blot; Co-IP; CCK8; EdU Staining; Colony Formation Assay; In Vivo Animal Model; IHC (Immunohistochemistry); Flow Cytometry(Non-apoptosis/cycle)

Clinical significance:

circVAMP3 expression was elevated in RCC patients in correspondence with TNM stage; circVAMP3 may represent an RCC biomarker and treatment target

Description:

circVAMP3 is upregulated in RCC/ccRCC and correlates with advanced TNM stage. It promotes aerobic glycolysis and proliferation by directly binding LDHA and enhancing FGFR1-dependent LDHA Y10 phosphorylation, increasing LDHA activity and tumor growth in xenografts.

Confidence score:

0.8794

Other information
Title:

Circular RNA circVAMP3 promotes aerobic glycolysis and proliferation by regulating LDHA in renal cell carcinoma.

Journal: Cell death & disease
Published: 2022
PubMed ID: 35525866
Study type:

combined biological and clinical study

Data availability: GSE108735; 10.1038/s41419-022-04863-0
Code availability: -