circRNA basic information
circBase ID: -
Name: hsa_circ_SHKBP1
Synonym: circSHKBP1 / Circular SHKBP1 (circSHKBP)
Host Gene: SHKBP1
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005595
MONDO name: laryngeal squamous cell carcinoma
Disease details: laryngeal squamous cell carcinoma / LSCC
Disease DO ID:
2876
Disease MeSH ID:
-
Disease NCIt ID:
C4044
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumors; adjacent normal samples

Cell lines:

TU686; AMC-HN-8; 16-HBE; HUVECs

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: HMGA2
Associated microRNA: miR-766-5p
Biological function: accelerates proliferation, invasion, angiogenesis, stem cell-like properties and tumor growth in LSCC
Molecular mechanism: circSHKBP1 acts as a competing endogenous RNA and sponges miR-766-5p to regulate HMGA2
Biological pathway or process:

proliferation (promotes); invasion (promotes); angiogenesis (promotes); stemness (promotes); ceRNA regulation (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; Clinical Sample Validation; Survival Analysis; Bioinformatics Analysis; Spearman's rank correlation analysis; Transfection; CCK8; Transwell Assay; Tube Formation Assay; Colony Formation Assay; Luciferase Reporter Assay; RNA Pull-Down; Western Blot; In Vivo Animal Model; IHC (Immunohistochemistry)

Clinical significance:

elevated circSHKBP1 expression was closely linked to poor prognosis; patients with high circSHKBP1 expression showed lower overall survival

Description:

circSHKBP1 is up-regulated in LSCC tissues and cell lines and is associated with poorer overall survival. Functionally, circSHKBP1 promotes LSCC proliferation, invasion, angiogenesis, stemness, and xenograft tumor growth by acting as a ceRNA that sponges miR-766-5p to derepress HMGA2.

Confidence score:

0.8534

Other information
Title:

Circular RNA CircSHKBP1 accelerates the proliferation, invasion, angiogenesis, and stem cell-like properties via modulation of microR-766-5p/high mobility group AT-hook 2 axis in laryngeal squamous cell carcinoma.

Journal: Bioengineered
Published: 2022
PubMed ID: 35502885
Study type:

combined biological and clinical study

Data availability: All data during this study are included in this article.
Code availability: -