circRNA basic information
circBase ID: hsa_circ_0045602
Name: hsa_circ_HN1
Synonym: circ_HN1
Host Gene: HN1
Genomic location(hg19): chr17:73142760-73144766:-
Genomic location(hg38): chr17:75146665-75148671:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

gastric primary tumors; adjacent normal gastric tissues

Cell lines:

HGC27; MKN74; GES-1; 293 FT

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: NT5E
Associated microRNA: miR-628-5p
Biological function: Promotes cell proliferation, spheroid formation, invasion, migration and tumor growth; inhibits apoptosis in gastric cancer.
Molecular mechanism: Acts as a ceRNA by competitively binding miR-628-5p to regulate NT5E expression.
Biological pathway or process:

ceRNA regulation (promotes); proliferation (promotes); invasion (promotes); migration (promotes); apoptosis (inhibits)

Detected method:
Q
Validation methods:

RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; Actinomycin D / DRB Stability Assay; Nuclear-Cytoplasmic Fractionation; Transfection; Luciferase Reporter Assay; RNA Pull-Down; Colony Formation Assay; MTT; EdU Staining; Annexin V/PI Flow Cytometry; Transwell Assay; In Vivo Animal Model; Clinical Sample Validation; Bioinformatics Analysis

Clinical significance:

-

Description:

circ_HN1 is up-regulated in gastric cancer and mainly localizes to the cytoplasm. It promotes malignant phenotypes (proliferation, spheroid formation, migration/invasion, tumor growth) and inhibits apoptosis by acting as a ceRNA that sponges miR-628-5p to upregulate NT5E.

Confidence score:

0.8122

Other information
Title:

A novel circular RNA circ_HN1/miR-628-5p/Ecto-5'-nucleotidase competing endogenous RNA network regulates gastric cancer development.

Journal: Bioengineered
Published: 2021
PubMed ID: 34637682
Study type:

combined biological and clinical study

Data availability: GSE83521; GSE112369; Supplemental data for this article can be accessed here.
Code availability: -