circRNA basic information
circBase ID: hsa_circ_0031608
Name: hsa_circ_SNX6
Synonym: circ_0031608
Host Gene: SNX6
Genomic location(hg19): chr14:35055435-35078948:-
Genomic location(hg38): chr14:34586229-34609742:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005291
MONDO name: brain aneurysm
Disease details: intracranial aneurysm / IA
Disease DO ID:
10941
Disease MeSH ID:
D002532
Disease NCIt ID:
-
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

IA lesions / IA tissues / aneurysmal domes

Cell lines:

Human brain vascular smooth muscle cells (VSMCs)

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: ARRDC3, FAM98A, LAMC1, FOXO3, DICER1, CCND2, IGF1R, TNRC6B
Associated microRNA: hsa-miR-1184, hsa-miR-153-3p, hsa-miR-548b-3p, hsa-miR-1265, hsa-miR-450b-3p, hsa-miR-182-5p
Biological function: promotes VSMC phenotypic modulation; promotes migration; promotes proliferation
Molecular mechanism: predicted miRNA sponge (ceRNA) with circRNA-miRNA-mRNA network; downstream targets not experimentally validated
Biological pathway or process:

PI3K/AKT (other); EGFR (other); proliferation (promotes); migration (promotes); ceRNA regulation (other)

Detected method:
Q
S
Validation methods:

circRNA-seq; RNase R Treatment; RT-qPCR; divergent primers PCR; Sanger Sequencing; Nuclear-Cytoplasmic Fractionation; Bioinformatics Analysis; Transfection; Western Blot; Wound Healing Assay; CCK8; Clinical Sample Validation

Clinical significance:

-

Description:

hsa_circ_0031608 is up-regulated in ruptured intracranial aneurysm tissues and increases during TNF-alpha-induced VSMC phenotypic transformation. Overexpression promotes a pro-inflammatory VSMC phenotype (↓alpha-SMA/calponin, ↑MMP-2) and enhances VSMC migration and proliferation, with a predicted (but not experimentally validated) circRNA-miRNA-mRNA ceRNA network.

Confidence score:

0.7571

Other information
Title:

Hsa_circ_0031608: A Potential Modulator of VSMC Phenotype in the Rupture of Intracranial Aneurysms.

Journal: Frontiers in molecular neuroscience
Published: 2022
PubMed ID: 35359572
Study type:

combined biological and clinical study

Data availability: GSA-Human: HRA001908
Code availability: -