circRNA basic information
circBase ID: hsa_circ_0043947
Name: hsa_circ_BRCA1
Synonym: circ_0043947
Host Gene: BRCA1
Genomic location(hg19): chr17:41199659-41215968:-
Genomic location(hg38): chr17:43047642-43063951:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005178
MONDO name: osteoarthritis
Disease details: Osteoarthritis / OA
Disease DO ID:
8398
Disease MeSH ID:
D010003
Disease NCIt ID:
C3293
Disease ICD11 ID:
558562409
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

-

Cell lines:

Human primary chondrocytes; HEK293T

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: RTN3, AGO2
Associated microRNA: miR-671-5p
Biological function: Promotes IL-1beta-induced injury in chondrocytes, including decreased viability/proliferation and increased apoptosis, extracellular matrix degradation, and inflammation; circ_0043947 silencing is protective.
Molecular mechanism: Acts as a ceRNA (molecular sponge) for miR-671-5p to up-regulate RTN3 expression.
Biological pathway or process:

proliferation (inhibits); apoptosis (promotes); inflammation (promotes); other pathway/process (promotes); ceRNA regulation (promotes)

Detected method:
Q
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; RT-qPCR; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); Transfection; MTT; EdU Staining; Cell Cycle Assay; Annexin V/PI Flow Cytometry; Western Blot; ELISA; Bioinformatics Analysis

Clinical significance:

-

Description:

In IL-1beta-stimulated human chondrocytes (an in vitro OA model), circ_0043947 is up-regulated and exacerbates injury phenotypes including reduced viability/proliferation and increased apoptosis, ECM degradation and inflammation. Mechanistically, circ_0043947 sponges miR-671-5p to de-repress RTN3 (circ_0043947/miR-671-5p/RTN3 axis), and circ_0043947 knockdown is protective.

Confidence score:

0.7624

Other information
Title:

Circ_0043947 contributes to interleukin 1beta-induced injury in chondrocytes by sponging miR-671-5p to up-regulate RTN3 expression in osteoarthritis pathology.

Journal: Journal of orthopaedic surgery and research
Published: 2022
PubMed ID: 35331286
Study type:

biological research

Data availability: Not applicable.
Code availability: -