circRNA basic information
circBase ID: hsa_circ_0007031
Name: hsa_circ_TUBGCP3
Synonym: circTUBGCP3
Host Gene: TUBGCP3
Genomic location(hg19): chr13:113158345-113181798:-
Genomic location(hg38): chr13:112504031-112527484:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0009807
MONDO name: osteosarcoma
Disease details: Osteosarcoma
Disease DO ID:
3347
Disease MeSH ID:
D012516
Disease NCIt ID:
C9145
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

osteosarcoma tissue; chondroma tissue

Cell lines:

143B; HOS; U20S; MG-63; HEK-293; hFOB1.19; U2OS

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: Vimentin, AGO2
Associated microRNA: miR-30b, miR-1266, miR-6812
Biological function: Promotes osteosarcoma cell proliferation, migration and survivability; inhibits apoptosis; promotes tumor growth in vivo.
Molecular mechanism: Acts as a miRNA sponge (ceRNA) for miR-30b (also binds miR-1266 and miR-6812), thereby modulating Vimentin expression and promoting osteosarcoma progression.
Biological pathway or process:

proliferation (promotes); migration (promotes); apoptosis (inhibits); metastasis (promotes); EMT (promotes); ceRNA regulation (promotes)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; divergent primers PCR; Sanger Sequencing; FISH / smFISH; RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; Transfection; CCK8; Transwell Assay; Annexin V/PI Flow Cytometry; In Vivo Animal Model; Western Blot; Bioinformatics Analysis; Clinical Sample Validation

Clinical significance:

-

Description:

circTUBGCP3 is up-regulated in osteosarcoma tissues and cell lines and functions as an oncogenic circRNA. It predominantly localizes to the cytoplasm and promotes proliferation, migration, survivability and in vivo tumor growth by sponging miR-30b to de-repress Vimentin expression.

Confidence score:

0.8351

Other information
Title:

Circular RNA circTUBGCP3 Is Up-Regulated and Promotes Cell Proliferation, Migration and Survivability via Sponge mir-30b in Osteosarcoma.

Journal: OncoTargets and therapy
Published: 2020
PubMed ID: 32440142
Study type:

combined biological and clinical study

Data availability: GSE96964
Code availability: -