circRNA basic information
circBase ID: hsa_circ_0000140
Name: hsa_circ_KIAA0907
Synonym: hsa_circ_002059
Host Gene: KIAA0907
Genomic location(hg19): chr1:155891165-155895634:-
Genomic location(hg38): chr1:155921374-155925843:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer / GC
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

gastric cancer tissues; adjacent nontumorous tissues; plasma samples

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: -
Associated microRNA: -
Biological function: Potential novel and stable diagnostic biomarker for gastric cancer; lower expression is associated with distal metastasis and advanced TNM stage.
Molecular mechanism: Not investigated; the study focused on expression, stability, and diagnostic value.
Biological pathway or process:

not specified (other)

Detected method:
Q
Validation methods:

Bioinformatics Analysis; Back-Splice Junction PCR / divergent primers PCR; RT-qPCR; Sanger Sequencing; Clinical Sample Validation; ROC Analysis

Clinical significance:

hsa_circ_002059 may be a potential novel and stable biomarker for the diagnosis of gastric carcinoma; lower expression levels were significantly correlated with distal metastasis, TNM stage, gender and age; ROC AUC was 0.73.

Description:

This study identified hsa_circ_002059, also listed as hsa_circ_0000140 in CircBase, as significantly down-regulated in gastric cancer tissues compared with adjacent nontumorous tissues. Its expression was also different between preoperative and postoperative plasma samples, correlated with clinicopathological features including TNM stage and distal metastasis, and showed diagnostic potential with an ROC AUC of 0.73. No mechanistic regulatory axis or functional pathway was experimentally investigated.

Confidence score:

0.6238

Other information
Title:

Using circular RNA as a novel type of biomarker in the screening of gastric cancer.

Journal: Clinica chimica acta; international journal of clinical chemistry
Published: 2015
PubMed ID: 25689795
Study type:

combined biological and clinical study

Data availability: CircBase (http://circbase.org/); circ2Traits (http://gyanxet-beta.com/circdb/); Supplementary data at http://dx.doi.org/10.1016/j.cca.2015.02.018
Code availability: -