circRNA basic information
circBase ID: hsa_circ_0005927
Name: -
Synonym: -
Host Gene: -
Genomic location(hg19): chr8:42259305-42260979:+
Genomic location(hg38): chr8:42401787-42403461:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer / GC
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

GC tissues; normal tissues; adjacent paracancerous tissues; adjacent normal tissues

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: TMEFF2
Associated microRNA: hsa-miR-198, hsa-miR-323a-3p, hsa-miR-338-3p, hsa-miR-548c-3p, hsa-miR-609
Biological function: Potential biomarker for GC screening; may function as an inhibitor of miRNAs in a GC risk-related ceRNA network.
Molecular mechanism: Predicted ceRNA mechanism in which hsa_circ_0005927 may bind miRNAs and regulate downstream mRNAs such as TMEFF2.
Biological pathway or process:

ceRNA regulation (other)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; Clinical Sample Validation; Bioinformatics Analysis

Clinical significance:

Could be a more authentic biomarker for GC screening.

Description:

hsa_circ_0005927 was identified as a down-regulated circRNA in gastric cancer by integrated microarray MetaDE analysis and was validated by qRT-PCR in clinical tissues. The study proposes that it may act through a circRNA-miRNA-mRNA ceRNA network, potentially binding multiple miRNAs and regulating downstream targets such as TMEFF2, and it may serve as a biomarker for GC screening.

Confidence score:

0.4032

Other information
Title:

MetaDE-Based Analysis of circRNA Expression Profiles Involved in Gastric Cancer.

Journal: Digestive diseases and sciences
Published: 2020
PubMed ID: 31894486
Study type:

combined bioinformatics and clinical study

Data availability: GSE89143; GSE93541; GSE83521; GSE78092
Code availability: -