circRNA basic information
circBase ID: hsa_circ_0006990
Name: hsa_circ_VAPA
Synonym: circVAPA
Host Gene: VAPA
Genomic location(hg19): chr18:9931806-9937063:+
Genomic location(hg38): chr18:9931809-9937066:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005233
MONDO name: non-small cell lung carcinoma
Disease details: non-small-cell lung cancer
Disease DO ID:
3908
Disease MeSH ID:
D002289
Disease NCIt ID:
C2926
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

NSCLC tissues; paired noncancerous tissue specimens; serum samples

Cell lines:

Calu-3; Calu-6; A549; H1299; HBE1

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: ZEB2
Associated microRNA: miR-342-3p
Biological function: Promotes proliferation, migration and invasion and inhibits apoptosis in NSCLC cells; promotes xenograft tumor growth in vivo.
Molecular mechanism: Acts as a miRNA sponge for miR-342-3p to positively regulate ZEB2 expression (ceRNA-like mechanism).
Biological pathway or process:

proliferation (promotes); apoptosis (inhibits); migration (promotes); invasion (promotes); metastasis (promotes); EMT (promotes); ceRNA regulation (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; Survival Analysis; ROC Analysis; Bioinformatics Analysis; Transfection; MTT; Colony Formation Assay; Annexin V/PI Flow Cytometry; Transwell Assay; Luciferase Reporter Assay; RNA Pull-Down; RIP (RNA Immunoprecipitation); Western Blot; In Vivo Animal Model; IHC (Immunohistochemistry)

Clinical significance:

High circVAPA expression is associated with poor overall survival and disease-free survival; shows diagnostic value in serum (AUC 0.9278).

Description:

circVAPA is upregulated in NSCLC tissues/cell lines and promotes malignant phenotypes (proliferation, migration/invasion, EMT) while inhibiting apoptosis. Mechanistically, it sponges miR-342-3p to increase ZEB2 expression, and its knockdown suppresses xenograft tumor growth; high circVAPA correlates with poor prognosis and shows serum diagnostic potential.

Confidence score:

0.8229

Other information
Title:

Circular RNA circVAPA contributes to non-small-cell lung cancer progression via miR-342-3p-dependent regulation of ZEB2.

Journal: World journal of surgical oncology
Published: 2021
PubMed ID: 34839824
Study type:

combined biological and clinical study

Data availability: The data sets used and/or analyzed during the current study are available from the corresponding author on reasonable request.
Code availability: -