circRNA basic information
circBase ID: hsa_circ_0006123
Name: -
Synonym: -
Host Gene: -
Genomic location(hg19): chr1:211092981-211093411:-
Genomic location(hg38): chr1:210919639-210920069:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC samples; adjacent non-cancerous tissues

Cell lines:

Huh7; HLF

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: -
Associated microRNA: -
Biological function: promotes migration and invasion; promotes EMT; may promote metastasis
Molecular mechanism: predicted ceRNA mechanism (circRNA sequesters miRNAs to regulate mRNAs) in TGF-beta-induced EMT
Biological pathway or process:

EMT (promotes); migration (promotes); invasion (promotes); metastasis (promotes); ceRNA regulation (other)

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; Clinical Sample Validation; Transfection; Transwell Assay; Western Blot; Bioinformatics Analysis

Clinical significance:

upregulated in HCC; upregulated in patients with vascular invasion; overexpression related to vascular invasion, TNM stage and BCLC stage

Description:

hsa_circ_0006123 is up-regulated in HCC tissues and further increased in patients with vascular invasion. Functional knockdown assays indicate it promotes EMT-associated migration and invasion in HCC cell lines, and it is proposed to act via a predicted circRNA-miRNA-mRNA ceRNA network under TGF-beta-induced EMT conditions.

Confidence score:

0.5923

Other information
Title:

Comprehensive analysis of TGF-beta-induced mRNAs and ncRNAs in hepatocellular carcinoma.

Journal: Aging
Published: 2020
PubMed ID: 33012723
Study type:

combined biological and clinical study

Data availability: -
Code availability: -