circRNA basic information
circBase ID: hsa_circ_0011240
Name: hsa_circ_PUM1
Synonym: circPUM1
Host Gene: PUM1
Genomic location(hg19): chr1:31437520-31454252:-
Genomic location(hg38): chr1:30964673-30981405:-
Subcellular localization: mitochondria; cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005580
MONDO name: esophageal squamous cell carcinoma
Disease details: esophageal squamous cell carcinoma / ESCC
Disease DO ID:
3748
Disease MeSH ID:
C562729; D000077277
Disease NCIt ID:
C4024
Disease ICD11 ID:
1417891145
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

xenograft tumors

Cell lines:

KYSE30; KYSE410; YES2; KYSE70; KYSE140; KYSE150; KYSE180; KYSE450; KYSE510; COLO680N; NE2; 293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: HIF1alpha, UQCRC1, UQCRC2, TOMM40, COA7, MARCH5, AMPK, GSDME, caspase 3
Associated microRNA: -
Biological function: promotes ESCC cell growth and tumorigenicity; enhances oxidative phosphorylation and ATP production; maintains mitochondrial homeostasis; inhibits pyroptosis
Molecular mechanism: circPUM1 localizes to mitochondria and interacts with UQCRC2, acting as a scaffold regulating mitochondrial complex III assembly (UQCRC1-UQCRC2 interaction), thereby promoting OXPHOS/ATP and suppressing AMPK activation and caspase3/GSDME-mediated pyroptosis
Biological pathway or process:

oxidative phosphorylation (promotes); mitochondrial function (promotes); AMPK (inhibits); pyroptosis (inhibits); apoptosis (inhibits); proliferation (promotes)

Detected method:
Q
B
S
Validation methods:

RNA-seq; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; Northern Blot; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; RNA Pull-Down; RIP (RNA Immunoprecipitation); Co-IP; Transfection; Colony Formation Assay; In Vivo Animal Model; IHC (Immunohistochemistry); Western Blot; Flow Cytometry(Non-apoptosis/cycle); Bioinformatics Analysis; Survival Analysis

Clinical significance:

Elevation of circPUM1 in ESCC patients was associated with worse overall survival of ESCC patients

Description:

In ESCC, circPUM1 (hsa_circ_0011240) is upregulated under hypoxia-like conditions and supports tumor growth. It localizes to mitochondria, binds UQCRC2 and modulates complex III assembly (with UQCRC1), thereby promoting OXPHOS/ATP production, maintaining mitochondrial homeostasis, and suppressing AMPK-associated caspase3/GSDME-mediated pyroptosis. Higher circPUM1 levels are associated with worse overall survival in ESCC patients.

Confidence score:

0.8772

Other information
Title:

Nuclear genome-derived circular RNA circPUM1 localizes in mitochondria and regulates oxidative phosphorylation in esophageal squamous cell carcinoma.

Journal: Signal transduction and targeted therapy
Published: 2022
PubMed ID: 35153295
Study type:

combined biological and clinical study

Data availability: -
Code availability: -